PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24509-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 742aa    MW: 80599.6 Da    PI: 4.8594
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24509-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-112986348
                     SS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqkyl 48
                     +W+++Ed+ l   ++ +G++             +W+ Ia  +   +t+ qc+ rw++yl
  TRIUR3_24509-P1 29 SWSAQEDDVLRAQIAHHGTDkyglllfvtyphlHWTVIATQFK-DKTARQCRRRWYNYL 86
                     6*****************************************9.**************7 PP
2Myb_DNA-binding41.24e-1392135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W+ eEd ll +a k+lG++ W+ Ia+ +  gRt++ +k+r+ +
  TRIUR3_24509-P1  92 KGGWSREEDMLLCEAQKLLGNK-WTEIAKVVS-GRTDNAVKNRFST 135
                      688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2472286IPR017930Myb domain
SMARTSM007179.5E-92688IPR001005SANT/Myb domain
CDDcd001672.46E-82986No hitNo description
Gene3DG3DSA:1.10.10.601.6E-163093IPR009057Homeodomain-like
PfamPF139212.8E-1230103No hitNo description
SuperFamilySSF466891.34E-2465144IPR009057Homeodomain-like
PROSITE profilePS5129419.49987141IPR017930Myb domain
SMARTSM007171.3E-1391139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-1994140IPR009057Homeodomain-like
CDDcd001671.22E-995136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MATGPDLTSS SAADAAASSA AKKDRHIVSW SAQEDDVLRA QIAHHGTDKY GLLLFVTYPH  60
LHWTVIATQF KDKTARQCRR RWYNYLNTEC KKGGWSREED MLLCEAQKLL GNKWTEIAKV  120
VSGRTDNAVK NRFSTLCKRR AKDDELFEEN GTVCSNASAK RVLTQSGGVT CAAPGSSPPI  180
KNMSSCKPDF KENIAPNMKS FAQQKSIQQD SRQPLASICP DNQSVNIVKT QSLVTKTSTK  240
QLHGEEQSCV KHEGNFLKRN DPKLATLLQQ ADLLSSLATK VNTENTSQSM DEAWQKLQHH  300
LVKKDDNDMS ESSMSGTASL LDDLDDLIVD PYENEEEDEQ KSREQNGATS QMAPDQIMDN  360
CPVDQIAEES SLCGNTLSST MEPCPEILAH INLGEAAEDM GLHFMEYSSP TRAAQAQQAK  420
ADAEIPASVD LSESAEVQAE QAKADAEIPV SVDLSEAAEG SWSQFMEYTS PAHTVLHAEG  480
DAETPASVKL REAAEGSLPQ CMEHMSPAHT LLRAKRDSEI PASANSNEAA EGSWSQFMEY  540
MSPAHIVLHA KADAETPASV NLGEAAEGSL PQCMEPMSPA HTLLRAKTGY EIPASANLSE  600
AAKYDSLQCT ECTSPARADL QAKADAEISE NFSEVAQHSR LQCAKFTSLA HTASKGKAVA  660
KKGTSENCSD VPEDSSTQPC MEFTSPAHTV PTFHPFTDNV PTPKITASER NFLLSVLELA  720
SPGSKPETSQ QPSCKRALLN SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-253014010107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519130.0JF951913.1 Triticum carthlicum clone TaMYB30 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160174.10.0transcription factor MYB124-like isoform X3
TrEMBLM8AV780.0M8AV78_TRIUA; Myb-related protein B
STRINGTRIUR3_24509-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.15e-65myb domain protein 88