PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_23877-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 194aa MW: 20968.4 Da PI: 6.3919 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85 | 6.8e-27 | 32 | 90 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s gC+++k vers p v++itY +H h+ TRIUR3_23877-P1 32 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLVITYMADHCHP 90 799***********************9988***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 29.574 | 26 | 92 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.3E-27 | 26 | 92 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-24 | 29 | 92 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-31 | 31 | 91 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-22 | 33 | 90 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007263 | Biological Process | nitric oxide mediated signal transduction | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MRSSTPRPKR SKKSQLKKVV CEVPVADGGV SSDLWAWRKY GQKPIKGSPY PRGYYKCSSM 60 KGCMARKLVE RSPAKPGVLV ITYMADHCHP VPTQINALAG TTRHKTTPAD GHAGTTTTTS 120 PKSHGDAHEA VRCDDESNET SSMAVDGATE DAAGDDGGEF WPTELDLDEL LAPVDGDLDH 180 VFDEDDALGR RLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-20 | 13 | 93 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-20 | 13 | 93 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00561 | DAP | Transfer from AT5G52830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368513 | 0.0 | AK368513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075A10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174842.1 | 1e-135 | WRKY transcription factor 22-like | ||||
Swissprot | Q9FLX8 | 4e-38 | WRK27_ARATH; Probable WRKY transcription factor 27 | ||||
TrEMBL | A0A3B6EGH7 | 1e-139 | A0A3B6EGH7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446NIF3 | 1e-139 | A0A446NIF3_TRITD; Uncharacterized protein | ||||
TrEMBL | M7ZTJ3 | 1e-141 | M7ZTJ3_TRIUA; Putative WRKY transcription factor 27 | ||||
STRING | TRIUR3_23877-P1 | 1e-142 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4279 | 30 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 1e-38 | WRKY DNA-binding protein 27 |
Publications ? help Back to Top | |||
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