PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_23856-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 254aa MW: 27856.1 Da PI: 7.4756 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 44.5 | 3.1e-14 | 203 | 240 | 23 | 59 |
EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +YYrC+s +Cp++k+ver++ d ++++tYe++Hnh TRIUR3_23856-P1 203 GYYRCSSIkDCPARKHVERCRGDAGMLIVTYENDHNHA 240 7****9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 2.0E-9 | 195 | 241 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-12 | 202 | 242 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.57 | 203 | 242 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-11 | 203 | 239 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-14 | 203 | 242 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MEGVEEANRA AVVSCKRLVA RLSLSAGDPF RLAAIPQQQQ QQQQQPQKRI LEQQQRPASS 60 DNKRFHFEPK PASEKPFHIE IPAARSGKEP EVITFSFDNS VCTSSAATSF FTNMSSQLIT 120 MSETSACAPA SRKAAHKADD DGKCHCPKKK SVPEAEGEEG GEDAGGERQG GRYTFRQLLV 180 EEVRAETHQR LSTPKVVINS GGGYYRCSSI KDCPARKHVE RCRGDAGMLI VTYENDHNHA 240 QPLDLATLTA NSEA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK370043 | 0.0 | AK370043.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2104B06. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156284.1 | 1e-95 | probable WRKY transcription factor 15 | ||||
TrEMBL | M7ZKR6 | 0.0 | M7ZKR6_TRIUA; Putative WRKY transcription factor 7 | ||||
STRING | TRIUR3_23856-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12705 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23320.1 | 5e-18 | WRKY DNA-binding protein 15 |