PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_22271-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 328aa MW: 36280.2 Da PI: 8.0381 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.9e-09 | 14 | 66 | 1 | 48 |
TSSS-HHHHHHHHH.....HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvd.....avkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l + +++ G g+W++++ g+ R+ k+c++rw +yl TRIUR3_22271-P1 14 KGPWTPEEDIILRNilvvpYIRDRGRGNWRAVPVSTGLMRCSKSCRLRWTNYL 66 79*********9885444467888888************************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.1e-15 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++Tt E+ ++v++ +lG++ W++Ia++++ Rt++++k++w+++l TRIUR3_22271-P1 72 RGNFTTHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 117 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 5 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.854 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-24 | 11 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-5 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-7 | 14 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.03E-7 | 16 | 66 | No hit | No description |
PROSITE profile | PS51294 | 22.287 | 67 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 70 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-12 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-12 | 72 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.36E-9 | 74 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDIILRNILV VPYIRDRGRG NWRAVPVSTG LMRCSKSCRL 60 RWTNYLRPGI RRGNFTTHEE GIIVHLQSLL GNRWAAIASY LPQRTDNDIK NYWNTHLKKK 120 LKKQQAMGAI FAPPPPPSSS AETAANLPAA VHLDNHHHRY HHDAIAASSS TVDHGCYSNP 180 EVTQHTTITM RRSPFADVAA DCSSSSYASS MDNISRLLGG FMKSSPPTAT DVKPNIAVVT 240 DPFMSFDRIS GTGAELAFVP GVQQLQQQPV LMGGISYDDE ATRQQQQQLH HQLPLCSIEK 300 WLLDEAAEQV ADLMELSDGG CSSLPLLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-20 | 14 | 121 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357478 | 0.0 | AK357478.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054F12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172742.1 | 0.0 | myb-related protein 306-like | ||||
TrEMBL | T1MWA1 | 0.0 | T1MWA1_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_22271-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 3e-74 | myb domain protein 60 |