PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_21732-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 55aa MW: 6342.28 Da PI: 9.9596 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.1 | 1.5e-25 | 2 | 45 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqv fskRr g++KKA+ELSvLCdaeva+++fs+ g+lye+ s TRIUR3_21732-P1 2 SRQVRFSKRRSGLFKKAFELSVLCDAEVALVVFSPAGRLYEFVS 45 69****************************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 6.67E-23 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.983 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-19 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-24 | 1 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-17 | 9 | 24 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-17 | 24 | 45 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
TSRQVRFSKR RSGLFKKAFE LSVLCDAEVA LVVFSPAGRL YEFVSSDTRY TVYPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169632.1 | 1e-25 | MADS-box transcription factor 51-like | ||||
Refseq | XP_020181042.1 | 1e-25 | MADS-box transcription factor 51-like | ||||
Swissprot | Q9XJ60 | 2e-21 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A453RMM3 | 1e-30 | A0A453RMM3_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453RN65 | 8e-31 | A0A453RN65_AEGTS; Uncharacterized protein | ||||
TrEMBL | T1MUT1 | 5e-31 | T1MUT1_TRIUA; Uncharacterized protein | ||||
STRING | Traes_7DS_4DF7EB08F.1 | 1e-31 | (Triticum aestivum) | ||||
STRING | TRIUR3_21732-P1 | 9e-32 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 3e-23 | AGAMOUS-like 20 |