PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_21190-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 88aa MW: 10063.7 Da PI: 9.808

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_21190-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +++++G+g+W++++ g+ R+ k+c++rw +yl TRIUR3_21190-P1 14 KGPWTPEEDLMLVSYIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-25	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.339	9	65	IPR017930	Myb domain
SMART	SM00717	1.3E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-17	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.67E-22	15	88	IPR009057	Homeodomain-like
CDD	cd00167	2.88E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-6	64	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MGRPPCCDKV GVKKGPWTPE EDLMLVSYIQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF NDQEEKLIVH LQALLGNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-14	14	88	27	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951914	1e-133	JF951914.1 Aegilops tauschii clone TaMYB31 R2R3-MYB protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006482590.1	1e-60	myb-related protein 306-like
Refseq	XP_009410391.1	9e-61	PREDICTED: myb-related protein 306-like
Swissprot	P81392	1e-57	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A1B2FQW7	1e-59	A0A1B2FQW7_WHEAT; MYB transcription factor 31
TrEMBL	A0A3B6LMQ8	1e-59	A0A3B6LMQ8_WHEAT; MYB transcription factor 31-B
TrEMBL	A0A3G1VUL5	1e-59	A0A3G1VUL5_AEGSP; MYB transcription factor 31
TrEMBL	A0A446UB51	6e-60	A0A446UB51_TRITD; Uncharacterized protein
TrEMBL	A0A446UB74	1e-59	A0A446UB74_TRITD; Uncharacterized protein
STRING	MLOC_34885.1	3e-60	(Hordeum vulgare)
STRING	Traes_5BL_632EBAD09.1	1e-60	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	6e-59	myb domain protein 96

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]