PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18590-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 302aa    MW: 33268.7 Da    PI: 9.9274
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18590-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY197.94.5e-6113027718170
            YABBY  18 CntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl.senedeevp 110
                      C +++ vsvPs+s++++vtvrCGhCtsllsvnl+   q  ++++h   s   e +e+ k ++ +++ n+  + ++s+++  +++ +++++e++ 
  TRIUR3_18590-P1 130 CRALIKVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSPPVQDH---SQGVERMENFKAHNISFRGNYPDYGTSSKYRMPMMFsTKSDQEHML 220
                      999****************************************98...66777899***************99999888777773455666777 PP

            YABBY 111 rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      ++ p    PekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWahfP+ihfgl
  TRIUR3_18590-P1 221 HMRP---APEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHFPNIHFGL 277
                      7655...6**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-57130277IPR006780YABBY protein
SuperFamilySSF470952.49E-7223271IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.1E-4226271IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGCDLQVHTF FSKKAPQDME CDLSQLPSCE QQQTQSFADA FGSLGYTSHS YGSQGTQQGN  60
LKRKWKGQGG NQLAGIGKGC PSSDLVQLLA GQGTQQGNLK RKWKGQGGNQ LAGIGKGCPS  120
SDLVQLLAGC RALIKVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLIQSPP VQDHSQGVER  180
MENFKAHNIS FRGNYPDYGT SSKYRMPMMF STKSDQEHML HMRPAPEKRQ RVPSAYNRFI  240
KEEIRRIKTN NPDISHREAF STAAKNWAHF PNIHFGLGSN ESSKKLDEAI TAPIPQKVQG  300
LY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0995850.0EU099585.1 Triticum aestivum YABBY2 (YAB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155667.11e-117protein YABBY 2-like isoform X1
SwissprotQ10FZ75e-93YAB2_ORYSJ; Protein YABBY 2
TrEMBLM8A6G10.0M8A6G1_TRIUA; Protein YABBY 2
STRINGTRIUR3_18590-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-50YABBY family protein