PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_18328-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 128aa MW: 13822.7 Da PI: 9.0283 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.2 | 1.2e-28 | 56 | 128 | 1 | 73 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPv 73 +CaaCk+lrr+Ca++C+++p f +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+r Pv TRIUR3_18328-P1 56 PCAACKLLRRRCAQECPFSPFFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRAPV 128 7**********************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.27 | 55 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.6E-29 | 56 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MSTASDWQQD HEVGKKIKSE SAAEADRMMA AARRSSSLPA AGAGPGSTPS FNTMTPCAAC 60 KLLRRRCAQE CPFSPFFSPL EPHKFASVHK VFGASNVSKM LLEVHESQRG DAANSLVYEA 120 NLRLRAPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-26 | 56 | 128 | 11 | 83 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-26 | 56 | 128 | 11 | 83 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095831 | 4e-80 | FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167556.1 | 2e-88 | LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 2e-50 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A3B5XWC3 | 3e-88 | A0A3B5XWC3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446IPY7 | 3e-88 | A0A446IPY7_TRITD; Uncharacterized protein | ||||
TrEMBL | M7ZFV1 | 2e-89 | M7ZFV1_TRIUA; Uncharacterized protein | ||||
STRING | Traes_1AS_43FB6A3CF.1 | 4e-89 | (Triticum aestivum) | ||||
STRING | TRIUR3_18328-P1 | 3e-90 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 1e-47 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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