PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_17960-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 277aa MW: 30740.1 Da PI: 9.531

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_17960-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	54	3.2e-17	189	230	1	41
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers 41 ++Dgy+WrKYGqK+ k++++pr+Y+rC +a + +vkkk+ TRIUR3_17960-P1 189 VKDGYQWRKYGQKVTKDNPCPRAYFRCPFApSRQVKKKIVYH 230 58**************************99899999998655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	14.757	184	227	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.1E-15	188	235	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-14	188	239	IPR003657	WRKY domain
SMART	SM00774	2.1E-10	189	248	IPR003657	WRKY domain
Pfam	PF03106	1.8E-12	190	229	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDEQWMIGQT SLSLSLNVGG PTARRGAPPV SKVLVEEDFM SSRKNHEVEA LEAELRRVGE 60 ENRRLSDMLR ALVAKYADLQ GKVSGMMAAA NNHHQSWTTS EGGSSASATR KRPRSDSLDT 120 ASRNPSPPLT AAGSSGRLAV SVTVGPDQAE CTSVQEPCNS KRVHADEVKA SRVSKLYVHA 180 DPSDLSLVVK DGYQWRKYGQ KVTKDNPCPR AYFRCPFAPS RQVKKKIVYH IHTPLIMFII 240 ISLVMCKRQP HVASPLWNII EHYDITILRG EAVMIEY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250\|UniProtKB:Q6QHD1, ECO:0000269\|PubMed:21726398, ECO:0000269\|PubMed:21961049, ECO:0000269\|PubMed:23462973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269\|PubMed:21726398, ECO:0000269\|PubMed:23462973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR827399	0.0	KR827399.1 Triticum aestivum WRKY48 transcriptional factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183067.1	1e-136	WRKY transcription factor WRKY28-like
Swissprot	Q0DAJ3	2e-77	WRK28_ORYSJ; WRKY transcription factor WRKY28
TrEMBL	M7ZJL8	0.0	M7ZJL8_TRIUA; Putative WRKY transcription factor 40
STRING	TRIUR3_17960-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1822	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	5e-27	WRKY DNA-binding protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y,Wang L The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] Wu KL,Guo ZJ,Wang HH,Li J The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] Berri S, et al. Characterization of WRKY co-regulatory networks in rice and Arabidopsis. BMC Plant Biol., 2009. 9: p. 120 [PMID:19772648] Delteil A, et al. Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence. Mol. Plant Pathol., 2012. 13(1): p. 72-82 [PMID:21726398] Peng Y,Bartley LE,Canlas P,Ronald PC OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity. Rice (N Y), 2010. 3(1): p. 36-42 [PMID:21961049] Chujo T, et al. OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus. Plant Mol. Biol., 2013. 82(1-2): p. 23-37 [PMID:23462973] Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly. PLoS ONE, 2013. 8(4): p. e62460 [PMID:23638091]