PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17409-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 361aa    MW: 39443.9 Da    PI: 4.7811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17409-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.4e-20104154155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +g++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++g
  TRIUR3_17409-P1 104 CGFRGVRQRT-WGKWVAEIREP---N-RvSRLWLGTFPTAEDAARAYDEAARAMYG 154
                      79*****999.**********8...2.58************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.63E-30104164No hitNo description
PfamPF008473.3E-13104154IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-21105163IPR016177DNA-binding domain
PROSITE profilePS5103222.3105162IPR001471AP2/ERF domain
SMARTSM003807.2E-35105168IPR001471AP2/ERF domain
PRINTSPR003672.7E-10106117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31106163IPR001471AP2/ERF domain
PRINTSPR003672.7E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGTSRLTLEK SAGSSNLPCN EYAFLARQNP KGDALPVASI LRKKRPRRSR DGPNSVSETI  60
RRWKEVNQQL EHDPQGAKRA RKPPAKGSKK GCMQGKGGPE NTQCGFRGVR QRTWGKWVAE  120
IREPNRVSRL WLGTFPTAED AARAYDEAAR AMYGALARTN FPAHPAQAPA VALPAAIEGV  180
VRGASASCES TTTSANHSDV ASNLPRQAQA LEIYSQPDVL ESTESVVLES VEHYSHKDTV  240
PDAGSSIARS TSEEDVFEPL EPISSLPDGE SDGFDIEELL RLMEADPIEV EPVTGGSWNC  300
GTNTGVEMGL QEPLYLDGLD QGMLEGMLQA DYPYPMWISE DRAMHNPAFH DAEMSEFFEG  360
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-15106162663ATERF1
3gcc_A6e-15106162663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7813540.0AY781354.1 Triticum aestivum DREB transcription factor 4A (DREB4) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156297.10.0dehydration-responsive element-binding protein 2B-like isoform X1
SwissprotQ5W6R43e-83DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLM7YEC40.0M7YEC4_TRIUA; Dehydration-responsive element-binding protein 2B
STRINGTRIUR3_17409-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-36ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]