PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17146-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 340aa    MW: 37280.8 Da    PI: 9.4442
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17146-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-152572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed  l+d v+++G g+W+++ r+ g+ R++k+c++rw ++l
  TRIUR3_17146-P1 25 KGPWTQAEDRVLLDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 72
                     79******************************************9986 PP
2Myb_DNA-binding47.44.5e-1578121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ l+++++ + G++ W++I+ +++ gRt++++k++w++
  TRIUR3_17146-P1  78 KGPFSPEEERLILRLHGLIGNK-WARISTHLP-GRTDNEVKNFWNT 121
                      79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0252072IPR017930Myb domain
SuperFamilySSF466895.39E-3022119IPR009057Homeodomain-like
SMARTSM007171.4E-122474IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-222679IPR009057Homeodomain-like
CDDcd001673.16E-112772No hitNo description
PfamPF139211.5E-142887No hitNo description
PROSITE patternPS0017504049IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.673127IPR017930Myb domain
SMARTSM007172.8E-1577125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2480126IPR009057Homeodomain-like
CDDcd001673.22E-1180123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MATAMDTTVP RSGVGEGGGG GGLKKGPWTQ AEDRVLLDHV RRHGEGNWNA VRRETGLQRC  60
GKSCRLRWAN HLRPNLRKGP FSPEEERLIL RLHGLIGNKW ARISTHLPGR TDNEVKNFWN  120
TRLKRRQRAG QSLYPPDVER EIALMRAQNI NPFADADGNT AASPFSDPFA LPPRPPSSTK  180
PASHSHSSPL IDQHHPLLNQ MQGMQMRHHA AQHQHPQPAF HHHHHHHHGG MRAAGLPPLP  240
ATAARPRELP SNQIETASCS GGGDGLLEAL LLGVDDHQLP RPNHGVCRAG SMPDLMYGGV  300
SSASDSDDTS QFPPGGQDAH HGGKWDFLIG QCIHPSRCSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28231265107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738040.0AK373804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185931.10.0myb-related protein Zm1-like
SwissprotQ9S7733e-62MYB97_ARATH; Transcription factor MYB97
TrEMBLM7ZLX30.0M7ZLX3_TRIUA; Transcription factor GAMYB
STRINGTRIUR3_17146-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.17e-58myb domain protein 97
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]