PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_15911-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 131aa MW: 14147.1 Da PI: 10.2228 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+sF++ L H +H TRIUR3_15911-P1 40 FVCKTCGRSFPSFQALGGHRTSH 62 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H TRIUR3_15911-P1 89 HQCHVCGLEFEMGQALGGHMRRH 111 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.2E-11 | 40 | 64 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.35E-8 | 40 | 111 | No hit | No description |
SMART | SM00355 | 0.086 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.408 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.0E-11 | 88 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.702 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MKQYRDEADA PSSLSLSLSL GAVADRSSKK MRRGGADGEF VCKTCGRSFP SFQALGGHRT 60 SHLRGRHGLA LGLTSGPGTK KTTDEKRAHQ CHVCGLEFEM GQALGGHMRR HREQESATTA 120 QAPPVLLQLF V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198416.1 | 7e-68 | zinc finger protein ZAT8-like | ||||
Swissprot | Q9LX85 | 3e-19 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | M7Z9N5 | 4e-90 | M7Z9N5_TRIUA; Zinc finger protein 1 | ||||
STRING | TRIUR3_15911-P1 | 7e-91 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 3e-20 | C2H2 family protein |