PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14814-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 569aa    MW: 62576.1 Da    PI: 9.4095
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14814-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.76.1e-25173274199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +
  TRIUR3_14814-P1 173 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLHGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RGD 263
                      99****************************97444.34579************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++v+r+
  TRIUR3_14814-P1 264 DGELRLGVRRA 274
                      9999***9996 PP
2Auxin_resp102.84.2e-34299380183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      +a++++++s+F+v++ Pr+++seF+v++++++k+l++++s+GmRfk + e++d++er+ +G+++g+s++dp+rWp+SkWr+L+
  TRIUR3_14814-P1 299 VASSLENRSIFHVCFDPRSGASEFIVPYWRFSKSLNHSFSIGMRFKDSNESDDANERS-TGLISGISEVDPIRWPGSKWRCLQ 380
                      578899***************************************************9.9**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-42163309IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-38169276IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-22171273No hitNo description
PfamPF023627.4E-23173274IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239173275IPR003340B3 DNA binding domain
SMARTSM010192.9E-22173275IPR003340B3 DNA binding domain
PfamPF065073.0E-28300380IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MESRAGVGLT PTRARMGSHE SQMTRRVAAR PHGMQRRLSA RVARATGESG RGGDRRATAR  60
GARLSRWPRR AAELKAEEGG SPWDVTGPLL CGFFHVNNDF GGRLGFRVSR GGMCFHTLFN  120
LADAATDEVY ARLALVADAE MFRQNVRESA SEEGEDGMAG GDGEKKPRMP HMFCKTLTAS  180
DTSTHGGFSV PRRAAEDCFA PLDYKQVRPS QELVAKDLHG TQWRFRHIYR GQPRRHLLTT  240
GWSSFVNKKK LVSGDAVLFL RGDDGELRLG VRRAVQLRNE ALFKAVNSNE SKLHTLSAVA  300
SSLENRSIFH VCFDPRSGAS EFIVPYWRFS KSLNHSFSIG MRFKDSNESD DANERSTGLI  360
SGISEVDPIR WPGSKWRCLQ VRWDDGNHCN HQRRVSPWEI ERVGGSISVT DCLSASSSKR  420
AKLYFPQGNL DAPVTDGNGY PDSVETGSFH RVLQGQELLM GSRAHGAARS QSPDVAKFRT  480
PDHQRFSANA RSYIPQQSPV EFPYHSSGFG ESLRFPEKVL GGAGEGDAKE GDADDVVAEC  540
ADPRVLDLFG RGHPAPGALH AIVAAPLGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-76113401107388Auxin response factor 5
4ldy_A1e-7612240184353Auxin response factor 1
4ldy_B1e-7612240184353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574870.0AK357487.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188126.10.0auxin response factor 14-like
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLM7YIC60.0M7YIC6_TRIUA; Auxin response factor
STRINGTRIUR3_14814-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-126ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]