PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14606-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 503aa    MW: 57741.7 Da    PI: 6.8389
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14606-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.5e-121751898
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +p kf+e+++g    s  ++le ++g+ ++++    +  +++vl+ GW  Fv+  +Lk+g f+vF+++g+s f  +v +f+
  TRIUR3_14606-P1  1 IPQKFVENFKGH--ISEVIKLEAPDGNIYNIQA--IRDLNKIVLGPGWGVFVSFYKLKVGYFLVFRYIGDSHF--KVLIFD 75
                     8*****988766..6779***************..999999****************************9999..887775 PP
2B352.11.2e-161362161399
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++ +++p kf++++ g    s  ++le ++g+ +++k+  +k  +++vl+ GW  F+++ +Lke D +vF+++g+s f  +v +f+ 
  TRIUR3_14606-P1 136 RREMSIPQKFVNNFRGR--ISEVMKLEAPDGNIYNFKV--TKDLNKIVLRYGWAAFASDYELKEHDLLVFRYIGDSHF--KVLIFDP 216
                      4569*******888766..6779***************..**********************************9999..9999885 PP
3B334.73.2e-113384221095
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                      ++ sg lv+ k++a+++    +e++ +tl +++  + W  +l    ++g+++l+ GW+ Fv  n+L+e D+++F+++++  e ++vv+
  TRIUR3_14606-P1 338 TSMSGSLVICKDYAAKYLP--HEDQFITLCHPHKsNIWVDNL-KVITDGSCMLSVGWSCFVLHNELRESDICLFEVSKNdGEVTMVVH 422
                      344567***********42..344579999977737776666.56777789************************9987566666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.589177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-15175IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-10174IPR003340B3 DNA binding domain
SMARTSM010190.046177IPR003340B3 DNA binding domain
CDDcd100172.76E-14175No hitNo description
SuperFamilySSF1019361.49E-16179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-22120219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-21121219IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561124217IPR003340B3 DNA binding domain
CDDcd100174.65E-18125215No hitNo description
SMARTSM010199.9E-8127217IPR003340B3 DNA binding domain
PfamPF023623.0E-14137215IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-16326421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-18328423IPR015300DNA-binding pseudobarrel domain
CDDcd100174.44E-8329423No hitNo description
PROSITE profilePS5086310.405329425IPR003340B3 DNA binding domain
SMARTSM010190.0016332425IPR003340B3 DNA binding domain
PfamPF023625.9E-9336422IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
IPQKFVENFK GHISEVIKLE APDGNIYNIQ AIRDLNKIVL GPGWGVFVSF YKLKVGYFLV  60
FRYIGDSHFK VLIFDFGTCC EKEVFHVLMN CDPNAQEKES NSESHRRCEL CDVHFYWHHL  120
DDRQKHFLRL MVGDFRREMS IPQKFVNNFR GRISEVMKLE APDGNIYNFK VTKDLNKIVL  180
RYGWAAFASD YELKEHDLLV FRYIGDSHFK VLIFDPSGCE KQSVHIVLNH APNVPKTGIS  240
HDRSFIRETR RRDCGSHDNN SRKTKKMTLV DSPSPRFAEG VTSPEVTMNS GGLREITELH  300
YVLATGCNLT TSQKAEVDAL VKKVRPVIPF YITAMNKTSM SGSLVICKDY AAKYLPHEDQ  360
FITLCHPHKS NIWVDNLKVI TDGSCMLSVG WSCFVLHNEL RESDICLFEV SKNDGEVTMV  420
VHSLEGGHHL QGKKPESQNK CSYPVKVEVT EEEESDNELA ESNYYYSRYA YDLTGKEQEE  480
IFRSALIQQG NPVYVAVLQE NHV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571060.0AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176105.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X2
TrEMBLT1MAI80.0T1MAI8_TRIUA; Uncharacterized protein
STRINGTRIUR3_14606-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-23B3 family protein