PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14379-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 285aa    MW: 29962.3 Da    PI: 5.5977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14379-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.64e-07200241955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + RR+ri +++  L+el+P+       K++ +++L kA+ Y+k +q
  TRIUR3_14379-P1 200 AKTRRERIGERLRVLQELVPNG-----SKVDMVTMLDKAITYVKFMQ 241
                      589******************5.....5****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.45E-10190244No hitNo description
SuperFamilySSF474592.49E-12191253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.342191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-10191249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-4200241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MALVGQPATF CYDGFIADGV PALMDAGGVG FGYGYDHHSH LLEEECLLGG HAHAWELPTG  60
NLGAEAPGSV NAFGGHDLGW TSPAGRMSSS SSVLTFDSPG EDNCAAAAWM DAADQLSYSP  120
STATAPAGSF SFEGCGGNGR TAASPSHKRP RARAQAQQGT EQESTTLPKK QCGGDRKSAT  180
KPTKTSAATS SAKDPQSDAA KTRRERIGER LRVLQELVPN GSKVDMVTML DKAITYVKFM  240
QLQLTVLETD AFWPAQGGEA PEISQVKAAL DAIILSSSQQ PRQWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158740.10.0transcription factor bHLH69-like
TrEMBLM7YLR50.0M7YLR5_TRIUA; Transcription factor bHLH83
STRINGTRIUR3_14379-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-41ROOT HAIR DEFECTIVE6