PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12876-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 453aa    MW: 49848.3 Da    PI: 4.6922
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12876-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS186.81.4e-571034482356
             GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                      ++lLl+ Aeav++gd + a a+ +rl  l   sp+     ++ Rla +f+++L++r+++     + +++p e +    s++++a+++ +e+sP+
  TRIUR3_12876-P1 103 TDLLLTGAEAVEAGDPRFALAVFSRLDGLllGSPENaaaGSFDRLAYHFAQGLRSRISS----ASTSCSPPEPP---ASDRMSAQQIIQELSPF 189
                      689***********************998885554422379*****************9....33333444444...7999************* PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       kf+h+taNqaIl+a++g+++vH++D++i++G+QWp+++  La    g  s+ +T++ + +       ++ ++rL++fA++l++pf+++ l  +
  TRIUR3_12876-P1 190 AKFAHFTANQAILDATKGDTHVHVVDLNIGEGIQWPSFMSDLARH--GGMSFHLTAITADADYTDGVHHASARRLSEFADSLNLPFQYSCLCLH 281
                      *******************************************84..6689********777788899999*******************8555 PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL.klvkslsPkvvvvveqeadh.nse......sFlerflealeyysalfds 270
                      + e  +l+e++ + + +++ ++    +       +l s+ +++L  +vk l+Pk++vvve+e+ + ++e      sF++ f+eal++++++f+s
  TRIUR3_12876-P1 282 SDE--DLHEFSKNCKGSVIFSCDTTSMPY-----KLLSKLPALLpACVKLLQPKLMVVVEEELVRiGKEvplckaSFVDFFFEALHHFTTVFES 368
                      444..458888888999999998855444.....45566778883579**************6665766788888******************* PP

             GRAS 271 l.eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                      l +  ++ ++    + vEre++g++i++ v + g++ +e +       + le+ G  +  ls  +++qa++l+  ++ +g++v +e+g
  TRIUR3_12876-P1 369 LaSCFVGGNQgACLRLVEREMVGPRIQDFVGQYGSMTVEVTA-----PRVLERYG--ACDLSGCNVAQARMLVGLFN-RGFEVVHEKG 448
                      *555555555677899*******************9666555.....67888877..7899999************9.99*9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.92376453IPR005202Transcription factor GRAS
PfamPF035145.0E-55103448IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
METMSYPCSP LLSLPTHEES SFFMWSPQVA LHENATIHVD HPTDQQPDNV FLDTAAQDYA  60
NDWHQQDASD LGVFTYCDER ILGQESGNLV AIQEELMEEN SLTDLLLTGA EAVEAGDPRF  120
ALAVFSRLDG LLLGSPENAA AGSFDRLAYH FAQGLRSRIS SASTSCSPPE PPASDRMSAQ  180
QIIQELSPFA KFAHFTANQA ILDATKGDTH VHVVDLNIGE GIQWPSFMSD LARHGGMSFH  240
LTAITADADY TDGVHHASAR RLSEFADSLN LPFQYSCLCL HSDEDLHEFS KNCKGSVIFS  300
CDTTSMPYKL LSKLPALLPA CVKLLQPKLM VVVEEELVRI GKEVPLCKAS FVDFFFEALH  360
HFTTVFESLA SCFVGGNQGA CLRLVEREMV GPRIQDFVGQ YGSMTVEVTA PRVLERYGAC  420
DLSGCNVAQA RMLVGLFNRG FEVVHEKGVN QRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2814344955362Protein SCARECROW
5b3h_A9e-2914344954361Protein SCARECROW
5b3h_D9e-2914344954361Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176685.10.0nodulation-signaling pathway 2 protein-like
TrEMBLM7Y7330.0M7Y733_TRIUA; Uncharacterized protein
STRINGTRIUR3_12876-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-34GRAS family protein