PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_12546-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 308aa MW: 34655.6 Da PI: 9.2149

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_12546-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	72.1	7.3e-23	244	296	2	51
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveit 51 dDg++WrKYGqK++ g++fpr+YYrCt++ gC ++++v+rs+ d v+++t TRIUR3_12546-P1 244 DDGFSWRKYGQKDILGAKFPRGYYRCTYRnaqGCAATRQVQRSDADLAVFDVT 296 8*************************98889**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56801	1.96E-6	47	108	No hit	No description
Gene3D	G3DSA:3.40.50.980	8.6E-4	51	109	No hit	No description
Gene3D	G3DSA:2.20.25.80	7.6E-21	241	297	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-19	241	296	IPR003657	WRKY domain
SMART	SM00774	9.3E-30	243	303	IPR003657	WRKY domain
PROSITE profile	PS50811	19.244	244	296	IPR003657	WRKY domain
Pfam	PF03106	2.1E-20	244	297	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MADDCVRSRQ SSSEAMKFLV ESGGAEGNAG PSYRNVLAKD TGLLQSPPGV DCLWDLFRAS 60 VEKYPSNPML GHRPVVDGKV GDYAWMTYRE VCDVVIKLAA AMSNSGVKQI WVYGNSFESF 120 LIAVINPNQQ ALENWAGQNG ITGNLEELCE NAKIKEHFIA ELAKAAKEKK LKGFEFIRAV 180 HLDAVPFDME RDLITPTYKK KRPQMLKYYQ GAIDALYKSS KKGLPRWTKK FRIPDDANLE 240 YTPDDGFSWR KYGQKDILGA KFPRGYYRCT YRNAQGCAAT RQVQRSDADL AVFDVTLNLS 300 CKRKKESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-17	245	296	18	69	Disease resistance protein RRS1
5w3x_D	1e-17	245	296	18	69	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ900687	8e-56	DQ900687.1 Hordeum vulgare clone BAC 455J22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564297.1	5e-59	long chain acyl-CoA synthetase 4
Swissprot	Q9T0A0	6e-48	LACS4_ARATH; Long chain acyl-CoA synthetase 4
TrEMBL	M7ZZ02	0.0	M7ZZ02_TRIUA; Long chain acyl-CoA synthetase 4
STRING	TRIUR3_12546-P1	0.0	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	8e-34	WRKY DNA-binding protein 30

Publications ? help Back to Top
Shockey JM,Fulda MS,Browse JA Arabidopsis contains nine long-chain acyl-coenzyme a synthetase genes that participate in fatty acid and glycerolipid metabolism. Plant Physiol., 2002. 129(4): p. 1710-22 [PMID:12177484] Fulda M,Shockey J,Werber M,Wolter FP,Heinz E Two long-chain acyl-CoA synthetases from Arabidopsis thaliana involved in peroxisomal fatty acid beta-oxidation. Plant J., 2002. 32(1): p. 93-103 [PMID:12366803] Shockey JM,Fulda MS,Browse J Arabidopsis contains a large superfamily of acyl-activating enzymes. Phylogenetic and biochemical analysis reveals a new class of acyl-coenzyme a synthetases. Plant Physiol., 2003. 132(2): p. 1065-76 [PMID:12805634] Zhao L,Katavic V,Li F,Haughn GW,Kunst L Insertional mutant analysis reveals that long-chain acyl-CoA synthetase 1 (LACS1), but not LACS8, functionally overlaps with LACS9 in Arabidopsis seed oil biosynthesis. Plant J., 2010. 64(6): p. 1048-58 [PMID:21143684] Jessen D, et al. Combined activity of LACS1 and LACS4 is required for proper pollen coat formation in Arabidopsis. Plant J., 2011. 68(4): p. 715-26 [PMID:21790813] Jessen D,Roth C,Wiermer M,Fulda M Two activities of long-chain acyl-coenzyme A synthetase are involved in lipid trafficking between the endoplasmic reticulum and the plastid in Arabidopsis. Plant Physiol., 2015. 167(2): p. 351-66 [PMID:25540329] Fulda M,Heinz E,Wolter FP Brassica napus cDNAs encoding fatty acyl-CoA synthetase. Plant Mol. Biol., 1997. 33(5): p. 911-22 [PMID:9106514]