PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12424-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 545aa    MW: 61648.1 Da    PI: 8.2726
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12424-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.74.8e-142771798
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     v+pk f++++ggk   s+ ++l++++g+ ++v +  + + +r++l++GW +Fv+an+++e+ +++F++ g+  f   v +f+
  TRIUR3_12424-P1  2 VMPKWFVNQFGGK--ISRSIKLQTPNGNIYDVAV--TENMNRTMLKSGWASFVDANQIEENYTLMFRYLGNALF--EVIIFD 77
                     6899***999999..6778***************..********************************997666..666665 PP
2B331.53.1e-10220320399
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE.......EEETTE......EEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliy.....rkksgr......yvltkGWkeFvkangLkegDfvvFk 83 
                       ++++s+v++s+ l + k++a eh ++  ++ t+++ +  +++++W+ kl y     +    +       +l+    +Fv++n ++egD+++F+
  TRIUR3_12424-P1 220 VQMKKSNVNNSRTLAICKDYALEH-LP--CGETVIILQlpRKNKVWKCKL-YnrpsrT----SdagrcnLYLG----NFVRDNPVREGDICLFQ 301
                      68999*******************.33..33344444435777*******.4345331....23345435555....***************** PP

                      ...E-SSSEE..EEEEE-S CS
               B3  84 ...ldgrsefelvvkvfrk 99 
                          +++++f+++v++++k
  TRIUR3_12424-P1 302 pmtNVKQKRFTMTVHLLSK 320
                      5432234777788877765 PP
3B341.32.8e-134725433299
                      --SEEEEEE.TTS-EEEEEE..EEETTEEEE-..TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  32 esktltled.esgrsWevkliyrkksgryvlt..kGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      + + l+l+  e++rsW  +l+++ +  ++v +  kGW  F+++n+L+egD ++Fkl+++ +  ++v++++r+
  TRIUR3_12424-P1 472 SVISLVLQReEKSRSWPTNLKHNMQHTTHVVKvlKGWTFFARDNRLREGDLCLFKLIKNkEPLTMVIHIIRR 543
                      4456777775788*******888888888877889**********************999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.14179IPR003340B3 DNA binding domain
SMARTSM010190.02179IPR003340B3 DNA binding domain
PfamPF023622.2E-12277IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-17284IPR015300DNA-binding pseudobarrel domain
CDDcd100177.54E-13277No hitNo description
Gene3DG3DSA:2.40.330.106.7E-16280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-10210317IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-11213322IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-9216300No hitNo description
PROSITE profilePS508637.796218321IPR003340B3 DNA binding domain
SMARTSM010190.051218321IPR003340B3 DNA binding domain
PfamPF023623.1E-8219320IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-12432543IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-11433543IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-11438542No hitNo description
PROSITE profilePS5086311.533440544IPR003340B3 DNA binding domain
SMARTSM010192.4E-6440544IPR003340B3 DNA binding domain
PfamPF023624.6E-11474543IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
QVMPKWFVNQ FGGKISRSIK LQTPNGNIYD VAVTENMNRT MLKSGWASFV DANQIEENYT  60
LMFRYLGNAL FEVIIFDSNG KEKVLCCAGM KAASDVNEPS SRYVDNSSSS HDGTTQSSAD  120
ECSDSDGSQK ESSYCYRKSA KMPAMCNSSE EFSDYSVTLH HMFSYGWIFF TAEDNSLESD  180
RQKLSKYYVL SGQCYLTEAQ EVKMLGLVKK IRPEIPVLVV QMKKSNVNNS RTLAICKDYA  240
LEHLPCGETV IILQLPRKNK VWKCKLYNRP SRTSDAGRCN LYLGNFVRDN PVREGDICLF  300
QPMTNVKQKR FTMTVHLLSK TSINHSPGAR TGIGSNHGRT STKKAGDVEE PPTDGSLTLC  360
LATARMHVSH FISHYTSLIH VTTCPGEEYS SEHEEHEVSD DSEGGSEPPF MLADKACLTW  420
AQEKKVLEKV EEIESELPLY VAIMRKSNVW RGGSYNTPTL KSAAGYHRGK SSVISLVLQR  480
EEKSRSWPTN LKHNMQHTTH VVKVLKGWTF FARDNRLREG DLCLFKLIKN KEPLTMVIHI  540
IRREE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE9965230.0HE996523.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_58237.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198703.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLT1M4L40.0T1M4L4_TRIUA; Uncharacterized protein
STRINGTRIUR3_12424-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-15B3 family protein