PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_08856-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WOX | ||||||||
Protein Properties | Length: 240aa MW: 27140.1 Da PI: 9.669 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.8e-09 | 2 | 41 | 23 | 57 |
SS--HHHHHHHHHHC....TS-HHHHHHHHHHH.HHHHHC CS Homeobox 23 rypsaeereeLAkkl....gLterqVkvWFqNr.Rakekk 57 r+p+aee+ + +++l ++ ++V++WFqNr R+k+k+ TRIUR3_08856-P1 2 RTPTAEEIHQVTARLqehgPIEGKNVFYWFQNRlRQKQKQ 41 89*************99999*************9999996 PP | |||||||
2 | Wus_type_Homeobox | 55.8 | 1.1e-18 | 1 | 41 | 24 | 65 |
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +rtP++eei+++ta+L+e+G ie+kNVfyWFQNr R++qkq TRIUR3_08856-P1 1 MRTPTAEEIHQVTARLQEHGPIEGKNVFYWFQNR-LRQKQKQ 41 79*******************************7.5777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 9.3E-7 | 2 | 41 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.46E-5 | 2 | 47 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MRTPTAEEIH QVTARLQEHG PIEGKNVFYW FQNRLRQKQK QQQQQRSDYF ARQIRRPQPL 60 PMLRRTPGNS FSPVQLQAPP APNTPACNRE GMYMQQPCYM TGQAAQASVN AAYYSQMQPS 120 LMHPNLETMA HGNIQAQAQA AMYFQTTASN NSNTQQPRAV QFPSTNNSYG APEAYSRRPV 180 LLNLFPQYPT FANRERTLHT ESAGSPRPST SRSFSLEAES SEVPSGDGSR SFYDFFGEGH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165955.1 | 1e-152 | WUSCHEL-related homeobox 5-like | ||||
TrEMBL | M7ZSR7 | 1e-176 | M7ZSR7_TRIUA; WUSCHEL-related homeobox 5 | ||||
STRING | TRIUR3_08856-P1 | 1e-176 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7509 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 4e-12 | WUSCHEL related homeobox 2 |