PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_07891-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 421aa    MW: 47431 Da    PI: 9.8098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_07891-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS233.31.1e-71167421122374
             GRAS 122 GlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhr 212
                      G+QW+aLlqaLa+Rpeg+p ++Ri gv sp  g   + +l +t  rL++fA+ lgv+fef + + + +++l+ ++++v+p+E++aVn++lql++
  TRIUR3_07891-P1 167 GIQWAALLQALATRPEGKPsRIRISGVPSPYLGphPAASLAATSARLRDFAQLLGVDFEFVP-LLRPVHALDRSDFSVDPDEVVAVNFMLQLYH 259
                      99*************887769********99888899*************************.599**************************** PP

             GRAS 213 lldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaer 305
                      ll   ++++++ +++L+l ksl P vv++ e e+++n++ F++rf++al+yy a+f+sl++ ++r+se+r+++Er ++g++i+ +v   ega+r
  TRIUR3_07891-P1 260 LL---GDSDEPGRRLLRLAKSLGPAVVTLGEYEVSLNRAGFVDRFASALSYYRAVFESLDVAMARDSEDRATLERSMFGERIRRAVGpPEGADR 350
                      **...66666677*************************************************************************83699*** PP

             GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                      + r+   ++W++ +e +GF+pv+ls++a++qa+lll  ++ +  y++ +   +++ l W++rpL++vSaWr
  TRIUR3_07891-P1 351 TDRMAGSAEWQALMEWCGFQPVRLSNYAESQAELLLWDYDaKYKYSLVQLPPAFLsLAWEKRPLLTVSAWR 421
                      ****************************************8888999999998888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.2911399IPR005202Transcription factor GRAS
SuperFamilySSF577569.07E-1090120IPR001878Zinc finger, CCHC-type
SMARTSM003431.6E-4100116IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.0E-9100117IPR001878Zinc finger, CCHC-type
PfamPF000981.2E-5101116IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.488101116IPR001878Zinc finger, CCHC-type
PfamPF035143.8E-69167421IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVMLKMLMEI ALPKIGELVV MMMAMISSSR SKPLIYQKMG TGVLKAAEVE IKKEHQVLMV  60
NKTTSCKKKG KGNKGNFKKN SKQVVAPEKK PKSGPKPETE CFYCKETGHW KRNCPKYLAE  120
KKDGKAHARV KRYETSDMYF AYKMEENSLE FFNHFHQGHT GLSKVPGIQW AALLQALATR  180
PEGKPSRIRI SGVPSPYLGP HPAASLAATS ARLRDFAQLL GVDFEFVPLL RPVHALDRSD  240
FSVDPDEVVA VNFMLQLYHL LGDSDEPGRR LLRLAKSLGP AVVTLGEYEV SLNRAGFVDR  300
FASALSYYRA VFESLDVAMA RDSEDRATLE RSMFGERIRR AVGPPEGADR TDRMAGSAEW  360
QALMEWCGFQ PVRLSNYAES QAELLLWDYD AKYKYSLVQL PPAFLSLAWE KRPLLTVSAW  420
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-15713242170375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536540.0AK353654.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001N07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150204.11e-178scarecrow-like protein 4
SwissprotQ53K161e-153SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLM8AGM40.0M8AGM4_TRIUA; Scarecrow-like protein 4
STRINGTRIUR3_07891-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.12e-91GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]