PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_07445-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 582aa    MW: 63151.8 Da    PI: 8.3036
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_07445-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07134154526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  TRIUR3_07445-P1 134 PCPDFRK-GVCRRGDMCEYAHG 154
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-5129155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-5132156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375134156IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5134154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4162192IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.822164188IPR000571Zinc finger, CCCH-type
SMARTSM0035666164187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MIDAKIALQD LLGLPKSGHG VLRVVTRATN LTSSPVSSPT AEDARSPSAA VMMMSKFPDL  60
PRVATSEKKE YPVDPSLPDI KNSIYASDEF RMYSFKIRPC SRAYSHDWTE CPFVHPGENA  120
RRRDPRKYHY SCVPCPDFRK GVCRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTGCNRRV  180
CFFAHTTDEL RPLYVSTGSA VPSPRASATA AMEMAAAMGL MPGSPSSVSA VMSPFTPPRS  240
PSGNGMPPSL GWQQPNVPTL HLPGSSLQSS RLRSSLNARD MPVDDYSLLQ DIDSQLINDL  300
CYSRLGSSAG GNHSSRTKSL NPSNLDDLFS AEMVSSPRYN NADQGAMFSP SQKAAILNQF  360
QQQQQLLSPI NTGFSPKAVD NQQMHSRSSL LQASLGISSP GRMSPRCVES GSPMNSHLAA  420
ALAQREKQQQ QQHQQHQQTM RSLSSRDLGP SAARASAAVG SPLSSSWSKW GSPSGAPDWG  480
VNGEELGKLR RSSSFELRSG GDDPDLSWVH TLVKESPPEK QVTTAESINN SVRPSPQMHP  540
GVSNGEGPSV STQLNRHDQA AVIGALLEQM QLDEQIGSLA AT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753040.0AK375304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3090H13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195419.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A446R9720.0A0A446R972_TRITD; Uncharacterized protein
STRINGTRIUR3_07445-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-166CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]