PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_06365-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 330aa    MW: 36552.6 Da    PI: 9.6629
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_06365-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.4e-18271111599
                      -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       + +p kf+++h   +++ +  tl+++ g+ W v +  ++++g   +++++GW eFv+an+L+e  f+vFk++g++ f  +vkvf++
  TRIUR3_06365-P1  27 KMPIPAKFMRRHLAAEPGLRRATLMSPLGKFWHVDVVRDGHGGDsdVYFAGGWAEFVRANRLEEENFLVFKYEGNMVF--TVKVFET 111
                      378*********666678889***************8866666677********************************..9999986 PP
2B354.12.8e-172503291499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        l + kkf+  +g+ +  ++ ++l+d+ grsW vkl  + +s++  +++GW +F   +g+k+gD +vF+l+++++f  +v+++r+
  TRIUR3_06365-P1 250 YSLNIGKKFCVMNGIAT--NRLMILKDSGGRSWPVKL--TLTSDQARMKAGWGHFSGHHGIKVGDLCVFHLVDEHTF--NVSIRRA 329
                      45889******999885..458***************..99999999************************998888..9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.74713112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-2213114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-2213114IPR015300DNA-binding pseudobarrel domain
CDDcd100174.14E-2014109No hitNo description
SMARTSM010198.0E-1416112IPR003340B3 DNA binding domain
PfamPF023629.0E-1627111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-21221329IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.9E-11237330IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281237330IPR003340B3 DNA binding domain
CDDcd100171.07E-15242328No hitNo description
SuperFamilySSF1019369.61E-20246329IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-14251329IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASDSNRKAP CGKPQFLKVL FTDFMEKMPI PAKFMRRHLA AEPGLRRATL MSPLGKFWHV  60
DVVRDGHGGD SDVYFAGGWA EFVRANRLEE ENFLVFKYEG NMVFTVKVFE TSGCIKNYDD  120
LVFAGALLEQ AAPRKRSSTG CGSQPTSKGH GGTHAQKTRK VSDRSLTGDG AIQAKKQYKP  180
RRILMEENDG EQDATTEKYA QADTHSGIAT EAKESDYTGT LPFYAKTATP CNIRYSYMAS  240
SLAGSKSNLY SLNIGKKFCV MNGIATNRLM ILKDSGGRSW PVKLTLTSDQ ARMKAGWGHF  300
SGHHGIKVGD LCVFHLVDEH TFNVSIRRAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194046.10.0B3 domain-containing protein At3g18960-like
TrEMBLT1LND10.0T1LND1_TRIUA; Uncharacterized protein
STRINGTRIUR3_06365-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-14B3 family protein