PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05544-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 275aa    MW: 32207.7 Da    PI: 4.7806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05544-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.2e-16164257199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      f+k  t++ +++ + +++pk+f+ e+   ++  e   +++ de   +  + ++ ++++++++l+kGW+eF+ + +L+ gD +vF+l++  +f  
  TRIUR3_05544-P1 164 FVKPITHACASRANFMTIPKQFT-EYlpAHD--E--PVVVVDEADDESHMMYNASRQGRHCYLSKGWREFAVDYDLENGDCLVFQLIEIAKF-- 250
                      78888888899999********9.6734322..4..499*************88888888*************************9976666.. PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v +fr+
  TRIUR3_05544-P1 251 KVYIFRA 257
                      9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-20161257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-18161257IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-22162256No hitNo description
SMARTSM010197.6E-16164258IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956164258IPR003340B3 DNA binding domain
PfamPF023624.3E-14164257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MERMASDLAR LLDLGASEAG DATKEAAKTA PGVGWHQESR MGHWRGSMEA ELHFVAMEIS  60
LRRRRRRRRR RRKKEEEEEE KQKEEEEEEE EEEEKKKKKK KEEEEEEESL PEQPNYLAGA  120
KQRDYQGLYA NEVWKGATDE EKATAAAKAE DLQRQIHQIR WPAFVKPITH ACASRANFMT  180
IPKQFTEYLP AHDEPVVVVD EADDESHMMY NASRQGRHCY LSKGWREFAV DYDLENGDCL  240
VFQLIEIAKF KVYIFRATPD YESDQTSEDS EDEQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16173RRRRRRRRRRRKK
26273RRRRRRRRRRKK
36371RRRRRRRRR
46373RRRRRRRRRKK
56471RRRRRRRR
66571RRRRRRR
76573RRRRRRRKK
86774RRRRRKKE
96974RRRKKE
1094100KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182056.11e-113B3 domain-containing protein Os06g0194400-like
TrEMBLT1LL680.0T1LL68_TRIUA; Uncharacterized protein
STRINGTRIUR3_05544-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-11B3 family protein