PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_04972-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 970aa MW: 105190 Da PI: 5.9905

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_04972-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.6e-08	346	367	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G C++G++C++ H TRIUR3_04972-P1 346 KRPCKFFAE-GRCRRGETCPYLH 367 689****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.3E-5	340	369	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.831	343	370	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.7E-6	343	369	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.37E-7	344	368	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-5	346	367	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence Send to blast
MASVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN 60 LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEGHNN DDWGKLASLE 120 KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVPSGPDAW KQRTRSPSPR GTEVAPEAGV 180 ESELEGGAEV EVGVLILTVD LIGGLREAEY LEGLLCSAEI LQLVDAEEAC IAGFLMKMVG 240 EGSSTSLIPQ TRGKGMAIRT RISWIHENQM TMYGAGNLEV ILMKVLGKDL NPEEITGLLI 300 NAMSLSKEGA AEVQVADMFM MSPLLMLDGE MMLGKQLMTE HRREQKRPCK FFAEGRCRRG 360 ETCPYLHEEA PQSQMGPGAS DEPPKYSGGR TPRGNYSNWG EETNATHAGS HILSRDDREN 420 PGSQHTARSD TGYGYKNRQL EDAGRDQYQI IPQEDFGSQG RNKSEMSASK QPQFLSPIQT 480 SADSMNNDKV SDMDGLSASA TTGNLSMQTG IHAANLLGGQ SLSQIAQSQD AVPQTSGAPI 540 HPVTSQQQDA TSMVPFNIQP HESNFSLHPN RQDQFSNFSL HPDRQDQFVA SQATANNSAP 600 SMQNQPVAAP YMGHGQHSYT LGSQALPAFN GHNFSVAGQV PQDRPTPFYA GQSQATVDMS 660 NPNQESGTHS MQNTHSFQPV APNMQAHSQA LQGLSGVPSQ DTGTQSIQNA HNFQPVAPPY 720 MQSRGQTLQG LSILPSSSSA DKPGAPLVPP NEEEIRRSLT SLAATLIMQP GTVAGLQLPQ 780 PILNPSLMAS LSAVEPRQWP WAQQQQAGTT QLARSEQQAP QQTLPAPSTA VGSSNGNNPA 840 PQSIGQTAAT SVVTAPQAAE NKKVEAKAKD SDGEQEGDKN KKGNKEESKA LKMFKLALAD 900 FVKDALKPTW KEGQLTREVH KTIVKKVVDK VTSTVENTPP TKEKIDVYMS YSKEKLSKLV 960 QAYVGKYVKA

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence Send to blast

MASVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN  60
LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEGHNN DDWGKLASLE  120
KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVPSGPDAW KQRTRSPSPR GTEVAPEAGV  180
ESELEGGAEV EVGVLILTVD LIGGLREAEY LEGLLCSAEI LQLVDAEEAC IAGFLMKMVG  240
EGSSTSLIPQ TRGKGMAIRT RISWIHENQM TMYGAGNLEV ILMKVLGKDL NPEEITGLLI  300
NAMSLSKEGA AEVQVADMFM MSPLLMLDGE MMLGKQLMTE HRREQKRPCK FFAEGRCRRG  360
ETCPYLHEEA PQSQMGPGAS DEPPKYSGGR TPRGNYSNWG EETNATHAGS HILSRDDREN  420
PGSQHTARSD TGYGYKNRQL EDAGRDQYQI IPQEDFGSQG RNKSEMSASK QPQFLSPIQT  480
SADSMNNDKV SDMDGLSASA TTGNLSMQTG IHAANLLGGQ SLSQIAQSQD AVPQTSGAPI  540
HPVTSQQQDA TSMVPFNIQP HESNFSLHPN RQDQFSNFSL HPDRQDQFVA SQATANNSAP  600
SMQNQPVAAP YMGHGQHSYT LGSQALPAFN GHNFSVAGQV PQDRPTPFYA GQSQATVDMS  660
NPNQESGTHS MQNTHSFQPV APNMQAHSQA LQGLSGVPSQ DTGTQSIQNA HNFQPVAPPY  720
MQSRGQTLQG LSILPSSSSA DKPGAPLVPP NEEEIRRSLT SLAATLIMQP GTVAGLQLPQ  780
PILNPSLMAS LSAVEPRQWP WAQQQQAGTT QLARSEQQAP QQTLPAPSTA VGSSNGNNPA  840
PQSIGQTAAT SVVTAPQAAE NKKVEAKAKD SDGEQEGDKN KKGNKEESKA LKMFKLALAD  900
FVKDALKPTW KEGQLTREVH KTIVKKVVDK VTSTVENTPP TKEKIDVYMS YSKEKLSKLV  960
QAYVGKYVKA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249720	0.0	AK249720.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf45g01, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174957.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X2
Swissprot	Q6YYC0	0.0	C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBL	M7ZGT2	0.0	M7ZGT2_TRIUA; Zinc finger CCCH domain-containing protein 55
STRING	TRIUR3_04972-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7766	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-08	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]