PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_04618-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 312aa MW: 34746.3 Da PI: 6.6482

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_04618-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.6	3.4e-06	112	187	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC.............................TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas..........................kapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ ++s + +K +i++ A YI++L TRIUR3_04618-P1 112 HMMRERQRREKLSQSYADLHAMVSSRSkvlrpsapavlphsislvlechvlneRVMPLQQDKNSIVQSAAVYIHEL 187 889**********************888999999999999999999999997633333368888999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-9	107	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.94	107	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-9	111	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.30E-4	111	192	No hit	No description
SuperFamily	SSF47459	6.54E-9	167	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MQMDSYYFHD DAHFFAGCGV PGSPDLPFAD LIASLWEPLP EVASQSACRQ YRGVGLELPG 60 TARGGTGNGI NIHRRMMDVL GRMGPATEEE ERPQHQQQQA AGAVESSRGF RHMMRERQRR 120 EKLSQSYADL HAMVSSRSKV LRPSAPAVLP HSISLVLECH VLNERVMPLQ QDKNSIVQSA 180 AVYIHELKVA KEQLQRRNDE LKAKILGHDA QQQCVKVQFE VDEPSSSIDS MIGALTRLKS 240 MNVKTRGIHS ILSGQRLTTE MNVETTIAAC EVEKAVEEAL QEVERNQLPD SEAPFPGSRS 300 AWPQTSHVQN VF

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365903	0.0	AK365903.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038M22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179773.1	0.0	transcription factor BHLH148 isoform X1
Refseq	XP_020179774.1	0.0	transcription factor BHLH148 isoform X1
Swissprot	Q75KV9	1e-109	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	M7ZKN8	0.0	M7ZKN8_TRIUA; Transcription factor bHLH92
STRING	TRIUR3_04618-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	9e-20	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]