PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_04332-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 29017.7 Da PI: 5.0499 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80 | 5.2e-25 | 28 | 97 | 1 | 71 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatg 71 lppGfrFhPtd+elvv+yL++kv+g++ ++ +i+evd+yk++PwdLp+++ +++ewyfF++rd+k++ g TRIUR3_04332-P1 28 LPPGFRFHPTDDELVVHYLCRKVAGQPQPV-PIIAEVDLYKFNPWDLPERALFGSREWYFFTPRDRKESGG 97 79*************************999.88***************8777899***********98754 PP | |||||||
2 | NAM | 40.9 | 6.1e-13 | 96 | 128 | 96 | 128 |
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg+kk Lvfy+grap+g+ktdW+mheyr+ TRIUR3_04332-P1 96 GGRTVGIKKALVFYSGRAPRGVKTDWIMHEYRI 128 6789***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-49 | 24 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.42 | 28 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-20 | 29 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MVKAEPTGAA AGAEGSSGRR DAEAELNLPP GFRFHPTDDE LVVHYLCRKV AGQPQPVPII 60 AEVDLYKFNP WDLPERALFG SREWYFFTPR DRKESGGRTV GIKKALVFYS GRAPRGVKTD 120 WIMHEYRIAE ADRAPGKKGS LKLDEWVLCR LYNKKNNWEK LKVEQDMAVE AGPNGEVMDA 180 LATDAMSDSF QTHDSSEIDS ASGLQQHGFM DMAQQQARMV TVKEDSDWFT GLSMDDLQTC 240 YMNMGQMVNP TTMPGQNGSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-75 | 15 | 160 | 2 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM027576 | 0.0 | HM027576.1 Triticum aestivum NAC transcription factor 4 (NAC4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181126.1 | 1e-173 | NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 1e-118 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | M7ZWY1 | 0.0 | M7ZWY1_TRIUA; NAC domain-containing protein 68 | ||||
STRING | TRIUR3_04332-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 6e-65 | NAC family protein |