PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_04216-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 285aa MW: 31769.2 Da PI: 7.5941

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_04216-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.4	2e-16	184	274	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k +++s+v + +l lp +f++++ k ++ t+tl de+ +++e k+ ++++ l++GW +F+ ++ +++gD+ vF+l++ ++f +v TRIUR3_04216-P1 184 FMKRMLHSHVVRGFWLGLPSHFCDTYLPK--NDCTITLVDEKDEEFESKY--LAYKKG--LSGGWAGFALDHVIRDGDSTVFQLIKPTTF--KV 269 8999******************99533..4459***********..555555..9*********************986777..99 PP EEE-S CS B3 95 kvfrk 99 +++r+ TRIUR3_04216-P1 270 HIIRA 274 99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-18	175	274	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.88E-22	177	273	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.54E-25	182	273	No hit	No description
SMART	SM01019	3.7E-16	184	275	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.321	184	275	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.9E-15	184	274	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MAIEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAT YAPKTPSPMK HKRRRVIEAA 60 TPVPSPPRRS RRLAHLPEVK YADACAELFV LPSAAHTVIA SAACCRTGDD FSSLFLSVEL 120 SLSIYYEAVG EDSERVGRWS PRRRSGSIYL AGGGGGPISM KARMEAASKA EELESQLDPQ 180 FPSFMKRMLH SHVVRGFWLG LPSHFCDTYL PKNDCTITLV DEKDEEFESK YLAYKKGLSG 240 GWAGFALDHV IRDGDSTVFQ LIKPTTFKVH IIRAAVGDDD NEEME

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	55	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249804	0.0	AK249804.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54k19, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149937.1	1e-168	B3 domain-containing protein Os03g0184500-like
Swissprot	Q10QS9	1e-116	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	T1LHQ0	0.0	T1LHQ0_TRIUA; Uncharacterized protein
STRING	TRIUR3_04216-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-45	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]