PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_04208-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 478aa    MW: 53583.9 Da    PI: 6.2012
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_04208-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.7e-10571371297
                      HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + + +++  + a +h  ++++e   +++le ++gr++ vk+      g +vl++GW +Fvk ++++++ ++ F + g+s+f   v++ 
  TRIUR3_04208-P1  57 ADH-MRIRPPVA-SHlrNLISEF-EEIQLEAPDGRVYPVKI--GWEFGDIVLRSGWHDFVKVHHIEQNSSIRFVYRGNSSF--EVHIS 137
                      444.67777777.4447666544.59***************..5555679***************************9**9..66555 PP
2B332.41.6e-1041147338100
                      EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
               B3  38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                      l d + r W+  l  rk+ ++ ++ + W +F ++ gL+e D+++F+l+++s+ +++v+v+rks
  TRIUR3_04208-P1 411 LLDGDDRDWDCMLGLRKSNKTWWIDRAWPKFISDVGLEEDDICLFELTDTSSLTMKVHVIRKS 473
                      678899*******999**999**************************999**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1245138IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.01248140IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-1248139IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-859137IPR003340B3 DNA binding domain
CDDcd100171.97E-966138No hitNo description
PROSITE profilePS508639.58779140IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-8197307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-7202306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-12384476IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.32389473IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-8410473IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.065411473IPR003340B3 DNA binding domain
CDDcd100174.03E-7411471No hitNo description
PfamPF023621.0E-8411472IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDMNGANQGC GEDCDAEGCE CGADGCQECE WWRLHCYWSH AGDHPRQFSL VAGDDFADHM  60
RIRPPVASHL RNLISEFEEI QLEAPDGRVY PVKIGWEFGD IVLRSGWHDF VKVHHIEQNS  120
SIRFVYRGNS SFEVHISDSP GHGNSSPPPP RDCHVPNEQV VPDPAHVQTS INIDYTAFPG  180
TRLSHEQEKK VLELAQRSMR SEFRLHVAAV NKRNANGDCH VYIPLTLLDS VKEGITEAPI  240
QLKAHSNDMI YVVGASKHGD DQVILQSKLS HFVDGHRMQD NDLLVFRSKG KAQLEVLVLD  300
PSGCEKSWFD TGNSSNVSRE GRRAHAQNTA STSFGWAKSG LQARESNEAG LQAPRSNNYI  360
STQSTPLHSQ QKEKVEERVR AIGSQFPVFV KVVSSSEVVT KTSLPGRLRL LLDGDDRDWD  420
CMLGLRKSNK TWWIDRAWPK FISDVGLEED DICLFELTDT SSLTMKVHVI RKSDIPAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163991.10.0B3 domain-containing protein Os03g0620400-like
TrEMBLT1LHP20.0T1LHP2_TRIUA; Uncharacterized protein
STRINGTRIUR3_04208-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4908122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-06B3 family protein