PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03303-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 112aa    MW: 12881.9 Da    PI: 9.1142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03303-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-1816106199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +t+s+v+   +l lp +f+++h  k  ++ +ltl+de+g + e  +   k++    l++GW++F+ +++L +gD +vF+l++r+ f  +v
  TRIUR3_03303-P1  16 FVKPMTQSHVTGGFWLGLPLPFCRKHLPK--RDEKLTLKDEQGVESESLYLALKNG----LSAGWRGFAIQHNLVDGDCLVFELINRTMF--KV 101
                      89************************533..5569************999777776....9************************98888..78 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       v+r+
  TRIUR3_03303-P1 102 YVIRQ 106
                      87776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-2510107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-2110107IPR015300DNA-binding pseudobarrel domain
CDDcd100179.77E-2614105No hitNo description
SMARTSM010192.2E-1916107IPR003340B3 DNA binding domain
PROSITE profilePS5086310.96916107IPR003340B3 DNA binding domain
PfamPF023626.0E-1616106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MAEELQAKLG SRYPSFVKPM TQSHVTGGFW LGLPLPFCRK HLPKRDEKLT LKDEQGVESE  60
SLYLALKNGL SAGWRGFAIQ HNLVDGDCLV FELINRTMFK VYVIRQSSYY ER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160679.19e-77B3 domain-containing protein Os06g0194400-like
SwissprotQ69V366e-52Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A3B6RFJ44e-79A0A3B6RFJ4_WHEAT; Uncharacterized protein
TrEMBLA0A446X7344e-79A0A446X734_TRITD; Uncharacterized protein
STRINGTRIUR3_03303-P12e-79(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-52B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]