PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03147-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 846aa    MW: 96432.1 Da    PI: 6.9288
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03147-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1431.5e-1386169190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      ++Y++YA + GFs  + ks++  ++g + +  + Cs++g+ + +         +r++ +++C a++ +k+++d   ++++ +l+HnH+l+
  TRIUR3_03147-P1  86 NYYKQYAVDSGFSAITLKSSYL-KSGVCRRLVLGCSRSGRGRANACY-----LSRETAKINCPARISLKLRQDRWLHIDDAKLDHNHPLN 169
                      69***********999988887.7888***************99998.....89999**************99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-1186169IPR004330FAR1 DNA binding domain
PfamPF105514.9E-24273366IPR018289MULE transposase domain
PROSITE profilePS509669.137560596IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-5571598IPR006564Zinc finger, PMZ-type
PfamPF044343.2E-6573592IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MPMETPIEAE GKSSEPPGNG SLLKIAEKSQ ELGGNPGREL PPLHQGKEVI LVDDNDSGQE  60
DGGGAKVDEN APRIGLRFKT YDDALNYYKQ YAVDSGFSAI TLKSSYLKSG VCRRLVLGCS  120
RSGRGRANAC YLSRETAKIN CPARISLKLR QDRWLHIDDA KLDHNHPLNQ SSDSPMSCYK  180
KLTDAKSVEN GSRLKGRRNV PIADKEQGNF TEIGRLKFGE GDDEQIQKFF GSMQNKNPNF  240
FYLVDLDKQG RLRNLFWSDA RSQAAHEYFG HDVVYFDTSY LTEKYDLPLV FFTGMNNHGH  300
PVLFGTGLLS DLSAESYTWL FRAFLSCMKG CYPDAIITEH YNAILDAVRE VFSQVKHRLC  360
LYRIMRDVAE NLKAHAEFKT IKRALKKVTY GSLKPPEFEA DWKKVIEEHG LAGNECLSSL  420
HEHRQLWAPA YLKDKFWAGM SVSQRGESVA SYYDGFVYPK TSLKQFFSKY EMILENKYKK  480
ELQADEESSH RTPLTVTKFY MEEQLAKAYT INMFRKFQEE LKATMYCDGM PSKVDGPFVT  540
FEVKECSYME DGKETESRTY EVYFCKEGLI VECECGFFQF TGILCRHALS VFKLHDMFEI  600
PSRYVLDRWK RDYKKLHALA HYPNEMLLGD TVERHDYLST QCRQVLNLGF ISESRYLVAL  660
KLLREAERAL LDDGQPTRDR QPRLLSFEAD APENGQGLFS SQFPEGEKNS LSTNAKHPGR  720
PAKKVAETDP DAVLRSNKEQ DFLRSSFVPT ETNMIQETSS GSHLESPDMG VPGSIHLMEG  780
ISPNLTFGPH FGMDVSHQHQ LPNQPRMMPN NFMQVQADPH VFGNQWAYNP TMQDNPMLRT  840
PTRRAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157633.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLM7YDI40.0M7YDI4_TRIUA; Protein FAR1-RELATED SEQUENCE 6
STRINGTRIUR3_03147-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-123FAR1-related sequence 6