PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_01282-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 413aa    MW: 45336.9 Da    PI: 6.8826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_01282-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10231279355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  TRIUR3_01282-P1 231 NSHSLAERLRRKKISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 279
                      58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.39E-11226283No hitNo description
SuperFamilySSF474599.42E-17226295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.44228278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16228294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-8231279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10234284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MALRPPKAGQ GELIDGLQEG SCGGAGSSLA SSLRVFDLGV GSHSLPLELR TCAFLDDENF  60
VGRSNPLRRR SRQAPLPHPH GFAPKDPSQQ SDQGPAANSG KEFLEGNWGS VAMHQKMGYD  120
SAAYGFQAYG MELEERPGAF SQNIQMSDEH SGGVKKRKGT DDCIALLNPS ASSKNVGDQQ  180
TEVSSQPERN SVERDNRKIS PKTQSKEDSS DGDGTKENYV HFRAKRGQAT NSHSLAERLR  240
RKKISERMKL LQDLVPGCNK ITGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPELGFDI  300
EQILSKQMML PQDRRLGFYG ADPGSSALIA HFNQGMMHPD MMCNASNPAG ALHGTIHDIS  360
MMNQMPEMWE TLQNIPHMNF NPAVAADSST NNAGPMKIEQ FSLKSSFHHD TFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609590.0AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198221.10.0transcription factor bHLH49-like
RefseqXP_020198222.10.0transcription factor bHLH49-like
RefseqXP_020198223.10.0transcription factor bHLH49-like
TrEMBLM8AM290.0M8AM29_TRIUA; Transcription factor bHLH74
STRINGTRIUR3_01282-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-53bHLH family protein