PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_01224-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 32265.4 Da PI: 7.8184 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.2 | 2.9e-08 | 103 | 169 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...................TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas................kapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ f L +++P + + + +K++ L A++Y+k+L+ TRIUR3_01224-P1 103 HVIAERKRREKLQRQFVSLATIVPAGVrkvpplflfssflrsnFIKLGHADKISLLGSAIDYVKQLE 169 899**********************888*************996677789***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.1 | 98 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 102 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.56E-5 | 103 | 173 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-10 | 103 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-6 | 103 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-6 | 104 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.596 | 231 | 299 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
EEELAYMYQQ EEPLPDHQGQ YYTSFYPCRS SNSPSFGGES LNELGQPYPA LSPSANFLSF 60 AAAEASTHNF SGGSYGGLQV QGTRQQLQAP ARRGRATASA HEHVIAERKR REKLQRQFVS 120 LATIVPAGVR KVPPLFLFSS FLRSNFIKLG HADKISLLGS AIDYVKQLEE KVKALGEQGL 180 LKSPECTLFE SKCSISAADK DDSAGPSGSG SSSGDSSPVD VEASTRGNTV LLKICCKERR 240 GVLVMVLSEL ENQGLSIITT NVLPFTDSCL NITITAKATG FSSAVELVKN LKMALRSFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 111 | ERKRRE |
2 | 107 | 112 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226407 | 3e-43 | AC226407.1 Oryza minuta clone OM__Ba0018H10, complete sequence. | |||
GenBank | AC226408 | 3e-43 | AC226408.1 Oryza minuta clone OM__Ba0085I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156973.1 | 1e-111 | transcription factor bHLH19-like | ||||
TrEMBL | T1L9S2 | 0.0 | T1L9S2_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_01224-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6401 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 6e-24 | bHLH family protein |