PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_01059-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 113aa MW: 12196.1 Da PI: 10.0813 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H TRIUR3_01059-P1 78 HRCHICGQGFEMGQALGGHMRRH 100 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.56E-6 | 76 | 104 | No hit | No description |
Pfam | PF13912 | 2.9E-10 | 78 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MTKHQRAAAD QAVSLSLSLS LGAVAGLNKK MRRAAAAAGG DQFLCKTRGR CHGLTLALTA 60 GDHYYSVKPK STDQKPEHRC HICGQGFEMG QALGGHMRRH REEAAPVLLE LFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250895 | 3e-62 | AK250895.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100e15, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198426.1 | 3e-51 | zinc finger protein ZAT11-like | ||||
TrEMBL | M8AND5 | 6e-77 | M8AND5_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_01059-P1 | 1e-77 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 5e-10 | C2H2 family protein |