PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_00571-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 477aa MW: 50694.5 Da PI: 5.5653

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_00571-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.8	3.1e-15	124	185	2	63
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++ TRIUR3_00571-P1 124 EDDKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSTRISCVTAENAALKQQL 185 689********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-15	123	187	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.3E-13	125	185	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.323	125	185	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.8E-16	127	185	No hit	No description
SuperFamily	SSF57959	8.75E-13	127	185	No hit	No description
CDD	cd14704	3.89E-21	128	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MAIAEASPFA DLPFPDDLPE FPHGPVGDDD AFALDGFDLD DLDIDFDFDL DLDLLPTDDV 60 RLPSPPPPLA TSSSSAGSPG GAGDSSSGSG GGADGGLKND ESSETSSRSA SAGSDGKAKE 120 GEGEDDKRRA RLVRNRESAH LSRQRKKQYV EELEGKVKAM QATIADLSTR ISCVTAENAA 180 LKQQLAVDSR EGIVLGPSQS RHGRVLAVDG PRDGVPEGVD SKLPHNSSET LPALLYIPRN 240 GKHVKINGNL VIQSVVASEK ASSRMCHSDG KTSCNQGQED TSLAIPGHVA QLNSGEVMES 300 AKAIKNKLMA LPPGDGSIYR DDDELLPQWF SEAMSGPMLS SGMCTEVFQF DISPTTIVPV 360 YSSGMHNASH NSTENLPSSQ SHKVKNRRIL HTMAVPLKGS TSNHTDHLKA HPKNESFAGK 420 KPASSVVVSV LADPRVDADG RISSKSLSRI FVVVLVDSVK YVTYSCVLPF KTHSPHL

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MAIAEASPFA DLPFPDDLPE FPHGPVGDDD AFALDGFDLD DLDIDFDFDL DLDLLPTDDV  60
RLPSPPPPLA TSSSSAGSPG GAGDSSSGSG GGADGGLKND ESSETSSRSA SAGSDGKAKE  120
GEGEDDKRRA RLVRNRESAH LSRQRKKQYV EELEGKVKAM QATIADLSTR ISCVTAENAA  180
LKQQLAVDSR EGIVLGPSQS RHGRVLAVDG PRDGVPEGVD SKLPHNSSET LPALLYIPRN  240
GKHVKINGNL VIQSVVASEK ASSRMCHSDG KTSCNQGQED TSLAIPGHVA QLNSGEVMES  300
AKAIKNKLMA LPPGDGSIYR DDDELLPQWF SEAMSGPMLS SGMCTEVFQF DISPTTIVPV  360
YSSGMHNASH NSTENLPSSQ SHKVKNRRIL HTMAVPLKGS TSNHTDHLKA HPKNESFAGK  420
KPASSVVVSV LADPRVDADG RISSKSLSRI FVVVLVDSVK YVTYSCVLPF KTHSPHL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT753298	0.0	KT753298.1 Triticum aestivum bZIP transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149137.1	0.0	bZIP transcription factor 60-like
Swissprot	Q8LIB3	1e-133	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	M8AMA2	0.0	M8AMA2_TRIUA; TGACG-sequence-specific DNA-binding protein TGA-1B
STRING	TRIUR3_00571-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	3e-53	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]