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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA9902 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family |
GRAS |
| Protein Properties |
Length: 539aa MW: 59657.7 Da PI: 4.8036 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA9902 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 408.7 | 5.4e-125 | 172 | 527 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85
lv++L++cAeav++++l+ a+al++++ la ++ +m+++a+yf+e+La+r+++ + s s++l++ f+
Tp57577_TGAC_v2_mRNA9902 172 LVHTLMACAEAVEQNNLTVAEALVKQIGYLAVSQEGAMRKVATYFAEGLARRIYG---------VFPQHS---ISDSLQI--HFY 242
689****************************************************.........222332...4555544..4** PP
GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
e++P+lkf+h+taNqaIlea++g++rvH+iDf+i+qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+s++++ l+++g+rLa+fA+
Tp57577_TGAC_v2_mRNA9902 243 ETCPYLKFAHFTANQAILEAFQGKSRVHVIDFSINQGMQWPALMQALALRPGGPPAFRLTGIGPPASDNSDHLQQVGWRLAQFAQ 327
************************************************************************************* PP
GRAS 171 elgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
+++v+fe++ +va++l+dl+ ++L++++ E++aVn+v++lh+l +++++l +hn++ F
Tp57577_TGAC_v2_mRNA9902 328 TIHVQFEYRGFVANSLADLDASMLELRSpeTESVAVNSVFELHKLNARPGALXX-----XXXXXXXXXXXXXXXXXXXNHNGPAF 407
*************************999889***************99999999.....445555566667788899******** PP
GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
l+rf+e+l+yys+lfdsle +l + +++ +++++lg++i+nvvaceg++r+erhetl++Wr+r+++aGF+pv+l+++a kqa+
Tp57577_TGAC_v2_mRNA9902 408 LDRFTESLHYYSTLFDSLEGSL--VEPQDKAMSEVYLGKQICNVVACEGTDRVERHETLNQWRNRFNSAGFSPVHLGSNAFKQAS 490
*********************8..67888999***************************************************** PP
GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ll+ ++ +dgy+vee++g+l+lgW++rpL+++SaW+
Tp57577_TGAC_v2_mRNA9902 491 MLLALFAgGDGYKVEENDGCLMLGWHTRPLIATSAWK 527
************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006808 | Biological Process | regulation of nitrogen utilization |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0010187 | Biological Process | negative regulation of seed germination |
| GO:0010218 | Biological Process | response to far red light |
| GO:0010233 | Biological Process | phloem transport |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:2000033 | Biological Process | regulation of seed dormancy process |
| GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| Sequence ? help Back to Top |
| Protein Sequence Length: 539 aa
Download sequence Send
to blast |
MKREHKQEHE DATMSGSKSE ICWEDDGGMD ELLAVVGYKV KSSDMAEVAQ KLEQLEQAMG 60
NFQDQDESTI AQQLSNDTVH YNPSDISNWL QTMLSNFDPQ PDPTVSSSSD NDLNAIPGKA 120
IYAAANTVVP VVDDDDDNDD FPSPKRVKRT DSTESTRPVV MVVETQEKGI RLVHTLMACA 180
EAVEQNNLTV AEALVKQIGY LAVSQEGAMR KVATYFAEGL ARRIYGVFPQ HSISDSLQIH 240
FYETCPYLKF AHFTANQAIL EAFQGKSRVH VIDFSINQGM QWPALMQALA LRPGGPPAFR 300
LTGIGPPASD NSDHLQQVGW RLAQFAQTIH VQFEYRGFVA NSLADLDASM LELRSPETES 360
VAVNSVFELH KLNARPGALX XXXXXXXXXX XXXXXXXXXX NHNGPAFLDR FTESLHYYST 420
LFDSLEGSLV EPQDKAMSEV YLGKQICNVV ACEGTDRVER HETLNQWRNR FNSAGFSPVH 480
LGSNAFKQAS MLLALFAGGD GYKVEENDGC LMLGWHTRPL IATSAWKLAA VNSVVVSH*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
