PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA9715

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 538aa MW: 60700.6 Da PI: 4.7729

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9715	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	356.5	4e-109	158	532	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseela 79 lv++Ll cAea+ +d+++a+ lL ++ +a+p+gd++qR+ +f+++L+ rl+ +++y+ + +++++++ +++l Tp57577_TGAC_v2_mRNA9715 158 LVHTLLVCAEAIGCRDNHQANLLLGKILAMANPSGDSLQRVSYCFAKGLKCRLSLyPHNNVYSNGALTTSASNDvslitRENKLE 242 689************************************************99889999999988888888778888888999 PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164 a++l+++++P+++f++++aN+aI + +g++ +HiiD+++++ lQWp+L++ LasRpegpp+lRiTg++ +++++ +l++ + Tp57577_TGAC_v2_mRNA9715 243 AFQLLYQTTPYITFGFMAANEAICQGSKGKSSIHIIDLGMEHTLQWPSLIRNLASRPEGPPRLRITGFST-NKENNAKLHTSMNF 326 99****************************************************************.6679999*** PP GRAS 165 LakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 L + A +lg+ +ef+++ + + + l++e+L++++gE+l Vn++l+lh+ ++es + +vL+ +k+lsP v+v+eq+++h Tp57577_TGAC_v2_mRNA9715 327 LVEEAISLGIVLEFHIISEPaTPSFLTIENLNLREGESLFVNSILKLHNYVKESRGYLK---AVLQSIKKLSPIAVTVIEQDTNH 408 ************8444488999*********************88877777...9****************** PP GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 n++ Fl rfle+l+yysa+fdslea +pr+s r+k+Er+ +++ei+n+va eg +r erhe++ +Wr++l++aGF+ +pl+ Tp57577_TGAC_v2_mRNA9715 409 NGPFFLGRFLESLHYYSAIFDSLEACMPRNSPIRMKIERAHFAEEICNIVAYEGPDRMERHERVDQWRRQLGRAGFHVMPLK--C 491 *****************************************************************************7..6 PP GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++qa+++l+ ++ +gy++ +e+g+l+lgWk+rp++++SaW+ Tp57577_TGAC_v2_mRNA9715 492 TSQARMMLSVYDCEGYTLSCEKGCLLLGWKGRPIMMASAWQ 532 79************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.089	132	514	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-106	158	532	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MWLSFYMNES DNHDFPIRRF CPARMEQDQG GDSHDQETVL DHIELCTFDT NTTPCLLASS 60 EVDDFVDSFI NMDQYEDQES QENHNHHQSF YHFVVNEEDD DVDACSIGYV PTTMEDEELE 120 MCDNTAITME EEEVEMNGTF GAIPQARASD GMNQGLDLVH TLLVCAEAIG CRDNHQANLL 180 LGKILAMANP SGDSLQRVSY CFAKGLKCRL SLYPHNNVYS NGALTTSASN DVSLITRENK 240 LEAFQLLYQT TPYITFGFMA ANEAICQGSK GKSSIHIIDL GMEHTLQWPS LIRNLASRPE 300 GPPRLRITGF STNKENNAKL HTSMNFLVEE AISLGIVLEF HIISEPATPS FLTIENLNLR 360 EGESLFVNSI LKLHNYVKES RGYLKAVLQS IKKLSPIAVT VIEQDTNHNG PFFLGRFLES 420 LHYYSAIFDS LEACMPRNSP IRMKIERAHF AEEICNIVAY EGPDRMERHE RVDQWRRQLG 480 RAGFHVMPLK CTSQARMMLS VYDCEGYTLS CEKGCLLLGW KGRPIMMASA WQVASFS*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MWLSFYMNES DNHDFPIRRF CPARMEQDQG GDSHDQETVL DHIELCTFDT NTTPCLLASS  60
EVDDFVDSFI NMDQYEDQES QENHNHHQSF YHFVVNEEDD DVDACSIGYV PTTMEDEELE  120
MCDNTAITME EEEVEMNGTF GAIPQARASD GMNQGLDLVH TLLVCAEAIG CRDNHQANLL  180
LGKILAMANP SGDSLQRVSY CFAKGLKCRL SLYPHNNVYS NGALTTSASN DVSLITRENK  240
LEAFQLLYQT TPYITFGFMA ANEAICQGSK GKSSIHIIDL GMEHTLQWPS LIRNLASRPE  300
GPPRLRITGF STNKENNAKL HTSMNFLVEE AISLGIVLEF HIISEPATPS FLTIENLNLR  360
EGESLFVNSI LKLHNYVKES RGYLKAVLQS IKKLSPIAVT VIEQDTNHNG PFFLGRFLES  420
LHYYSAIFDS LEACMPRNSP IRMKIERAHF AEEICNIVAY EGPDRMERHE RVDQWRRQLG  480
RAGFHVMPLK CTSQARMMLS VYDCEGYTLS CEKGCLLLGW KGRPIMMASA WQVASFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-60	165	531	26	378	Protein SCARECROW
5b3h_A	3e-60	165	531	25	377	Protein SCARECROW
5b3h_D	3e-60	165	531	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9715

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013445133.2	0.0	DELLA protein RGL1
TrEMBL	A0A2K3PF76	0.0	A0A2K3PF76_TRIPR; Della protein rgl1-like protein
STRING	AES83798	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13251	27	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-74	RGA-like 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9715