PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9644
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 158aa    MW: 18482.7 Da    PI: 10.88
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9644genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.82.1e-1259118362
                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                               e+++ rr+++NRe+ArrsR RK+  +e+L++ v  + aeN++L ++l+ +  +  +l++e
  Tp57577_TGAC_v2_mRNA9644  59 EDRKRRRMISNRESARRSRMRKQRHLENLRNQVNRFRAENQELNNTLQFIVYHFNRLRTE 118
                               57899**************************************99998766666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-1457121IPR004827Basic-leucine zipper domain
PfamPF001702.0E-1059119IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.82959122IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-959123No hitNo description
SuperFamilySSF579594.02E-1161110No hitNo description
CDDcd147025.94E-1862106No hitNo description
PROSITE patternPS0003606479IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MLSSLSNSDF TVLDEDVTPW NFPNIFSPFN PTSPKPTSSS GSGEPNEKPV LNDSNRNIED  60
RKRRRMISNR ESARRSRMRK QRHLENLRNQ VNRFRAENQE LNNTLQFIVY HFNRLRTENE  120
WLRLERTMLG QKLSNISQNL VFQPFSSAWP CNIVTAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16064RKRRR
27380RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9644
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511808.24e-77bZIP transcription factor RISBZ3-like
TrEMBLG7K2E81e-91G7K2E8_MEDTR; BZIP transcription factor
STRINGAES944992e-92(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54353254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.15e-23basic leucine-zipper 5