PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G49760.1 | ||||||||
Common Name | AtbZIP5, bZIP5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 156aa MW: 18360.1 Da PI: 9.987 | ||||||||
Description | basic leucine-zipper 5 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.5 | 4.3e-11 | 72 | 130 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +rk +NRe+A+rsR++K++ +ee +L+ +N++Lk++l ++++ k+e+ AT3G49760.1 72 RKKKRKLSNRESAKRSREKKQKHLEEMSIQLNQLKIQNQELKNQLRYVLYHCQRTKMEN 130 6899****************************************999999999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-10 | 63 | 125 | No hit | No description |
SMART | SM00338 | 1.9E-12 | 68 | 132 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.8E-8 | 69 | 116 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.645 | 70 | 133 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.94E-9 | 72 | 120 | No hit | No description |
CDD | cd14702 | 5.20E-17 | 73 | 124 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 75 | 90 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0003015 | anatomy | primary root differentiation zone | ||||
PO:0006203 | anatomy | pericycle | ||||
PO:0009005 | anatomy | root | ||||
PO:0020124 | anatomy | root stele | ||||
PO:0025257 | anatomy | primary root elongation zone |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MMSTISPVFS TEPGLLTSVL PAFETSFTPW DISHLFSVFD SLIDPKPVST HDYGSVNQIG 60 SDMSPTDNTD ERKKKRKLSN RESAKRSREK KQKHLEEMSI QLNQLKIQNQ ELKNQLRYVL 120 YHCQRTKMEN DRLLMEHRIL HDKLLNIRQV LMFRQT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 77 | ERKKKRKL |
2 | 71 | 92 | RKKKRKLSNRESAKRSREKKQK |
3 | 72 | 77 | KKKRKL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 110742132 | 0.0 | ||||
Genevisible | 252232_at | 0.0 | ||||
Expression Atlas | AT3G49760 | - | ||||
AtGenExpress | AT3G49760 | - | ||||
ATTED-II | AT3G49760 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G49760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G49760 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226923 | 0.0 | AK226923.1 Arabidopsis thaliana mRNA for bZIP transcription factor AtbZip5, complete cds, clone: RAFL09-21-L10. | |||
GenBank | AL132965 | 0.0 | AL132965.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T16K5. | |||
GenBank | BT024823 | 0.0 | BT024823.1 Arabidopsis thaliana At3g49760 gene, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566925.1 | 1e-113 | basic leucine-zipper 5 | ||||
TrEMBL | A0A384KCL6 | 1e-112 | A0A384KCL6_ARATH; BZIP5 | ||||
TrEMBL | Q29PT3 | 1e-112 | Q29PT3_ARATH; At3g49760 | ||||
STRING | AT3G49760.1 | 1e-112 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3338 | 26 | 65 | Representative plant | OGRP8744 | 8 | 15 |
Link Out ? help Back to Top | |
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Phytozome | AT3G49760.1 |
Entrez Gene | 824138 |
iHOP | AT3G49760 |
wikigenes | AT3G49760 |