PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9568
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 341aa    MW: 38717.4 Da    PI: 7.921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9568genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-172168148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd +lv +++q+G+g+W++++   g+ R+ k+c++rw +yl
  Tp57577_TGAC_v2_mRNA9568 21 KGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 68
                              79********************************************97 PP
2Myb_DNA-binding48.91.5e-1574119148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T  E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Tp57577_TGAC_v2_mRNA9568  74 RGNFTDHEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 119
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-241271IPR009057Homeodomain-like
PROSITE profilePS5129424.4891672IPR017930Myb domain
SuperFamilySSF466893.67E-3018115IPR009057Homeodomain-like
SMARTSM007172.3E-132070IPR001005SANT/Myb domain
PfamPF002496.8E-162168IPR001005SANT/Myb domain
CDDcd001678.04E-112368No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2472124IPR009057Homeodomain-like
PROSITE profilePS5129419.23273123IPR017930Myb domain
SMARTSM007175.0E-1573121IPR001005SANT/Myb domain
PfamPF002491.2E-1374119IPR001005SANT/Myb domain
CDDcd001675.41E-1076119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
LKKYILKMVR PPCCEKLGIK KGPWTPEEDI ILVSYIQQHG PGNWRSVPTN TGLMRCSKSC  60
RLRWTNYLRP GIKRGNFTDH EEKMIVHLQA LLGNRWAAIA SYLPQRTDND IKNYWNTHLK  120
RKLNKDQSSD ETGVDQEARS QPPNKGQWER RLQTDIHMAK QALSEALSLQ QSPTKSEMKP  180
SSSSSHSHEH LPNLHIPSPY ASSYENIARL MENWMKSPNS AETNSSSIFS NMVTTAGSSC  240
SEGAQSTTQD HHVFDSKIFN SKSEYYASRF RATHEGNNNL MNTKESLFQD EMINIKGKME  300
TNVPLTLLEK WLFEDGGASH ECHEDLINMS LGDQSTSDLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251912325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9568
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9377831e-113KJ937783.1 Caragana korshinskii MYBJ2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441833.10.0myb-related protein 306
RefseqXP_013442559.10.0myb-related protein 306
SwissprotP813921e-110MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2K3LGR90.0A0A2K3LGR9_TRIPR; MYB-related protein 306-like protein
STRINGAES912560.0(Medicago truncatula)
STRINGAET042840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-104myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]