PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8863
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 680aa    MW: 75747.9 Da    PI: 5.8721
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8863genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.21.6e-1313026781374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseela 79 
                               lv+lLl+cAeav++++  la+++L +l+  ++p gd+mqR+a++fte L+arla + ++  ++ + s+t++++            
  Tp57577_TGAC_v2_mRNA8863 302 LVHLLLACAEAVAKEEYMLAKRYLHQLNRVVTPLGDSMQRVASCFTESLSARLAATLTTKTSSNKKSTTPSSSssssssC----- 381
                               68****************************************************95555444444444443332333330..... PP

                      GRAS  80 al..............klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgsp 150
                                +              ++ ++++P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvg+ 
  Tp57577_TGAC_v2_mRNA8863 382 -FssfpsnpmevlkiyQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARSGGAPFLRITGVGP- 464
                               .24456666666655599******************************************************************. PP

                      GRAS 151 esgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                    e+++etg+ L+++A++l++pfef++ v ++ledl++++++ + gEalaVn v +lhr++       ++  ++L+++++  
  Tp57577_TGAC_v2_mRNA8863 465 ---CIESVRETGRCLNELAHSLRIPFEFHP-VGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVP------GNHLGNLLSMIRDQA 539
                               ...***************************.7*******************************9......444557********* PP

                      GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                               P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p es  r+kvE+ ++++ei+n+vaceg+er+erhe+lekWr+ +e
  Tp57577_TGAC_v2_mRNA8863 540 PNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPVESAPRAKVEQYIFAPEIRNIVACEGEERIERHERLEKWRKIME 624
                               ************************************************************************************* PP

                      GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 GFk vpls +a++q + ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Tp57577_TGAC_v2_mRNA8863 625 GKGFKGVPLSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWR 678
                               *****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.757276658IPR005202Transcription factor GRAS
PfamPF035145.5E-129302678IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MINSLCGSSN SHKEKCLQPT SSNHTNIHSK KNTTNSSDDL DQINILTPQS LNLPSLKFDL  60
DGDVEVQSPD SSMWESFFND HLDINNDFMI SSPIRNINPN SPQASTYNNC SNYNNNNNNN  120
YAQGMQIQTF SPPRFGALNS SNNINNQQKG KGLSPLHRVF NSPNNQYMQH VENLSLPAIE  180
EFLEDYQGDV DFSTPKISSS DQCFDMETPI STILDSLSMQ NSSSSRYCGS ISEESSILHG  240
GNSSQDSDIY HQMGSMASAS LSQALQQERY QEKHQKLQAQ QQSLTVPIPI GIEQEQDSGL  300
QLVHLLLACA EAVAKEEYML AKRYLHQLNR VVTPLGDSMQ RVASCFTESL SARLAATLTT  360
KTSSNKKSTT PSSSSSSSSS CFSSFPSNPM EVLKIYQIVY QACPYIKFAH FTANQAIFEA  420
FEAEERVHVI DLDILQGYQW PAFMQALAAR SGGAPFLRIT GVGPCIESVR ETGRCLNELA  480
HSLRIPFEFH PVGEQLEDLK PHMFNRRVGE ALAVNTVNRL HRVPGNHLGN LLSMIRDQAP  540
NIVTLVEQEA SHNGPYFLGR FLEALHYYSA IFDSLDATFP VESAPRAKVE QYIFAPEIRN  600
IVACEGEERI ERHERLEKWR KIMEGKGFKG VPLSPNAVTQ SRILLGLYSC DGYRLTEDKG  660
CLLLGWQDRA IIAASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-9330967726378Protein SCARECROW
5b3h_A1e-9330967725377Protein SCARECROW
5b3h_D1e-9330967725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8863
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5726830.0JN572683.2 Medicago truncatula required for arbuscular mycorrhization 1 (RAM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622095.10.0DELLA protein RGL2
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2K3PCA60.0A0A2K3PCA6_TRIPR; Della protein gai1-like protein
STRINGAES783130.0(Medicago truncatula)
STRINGAES783160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-92RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]