PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8791
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 519aa    MW: 57583.6 Da    PI: 4.6928
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8791genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.31.1e-851094481328
                      GRAS   1 lvelLlecAeavssgdle..laqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........s 74 
                               lv+lL+++Aea++  +++  laq +L rl++l +s +g++m+Rlaayft AL++ l++  +++ +  + +     +        +
  Tp57577_TGAC_v2_mRNA8791 109 LVHLLMAAAEALTGTNKShhLAQVILIRLKDLvSSTHGTNMERLAAYFTDALQTLLNGADTGTTANNHHN-----KlclltgphQ 188
                               68**********98666555************888899********************444444333322.....1223345669 PP

                      GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg..ppslRiTgvgspesg.... 153
                               ++ l+a++l++++sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+q+L+sR+eg   p+lRiT+++++++     
  Tp57577_TGAC_v2_mRNA8791 189 TDLLSAFQLLQDMSPYVKFAHFTANQAILEAVTHDRRVHIVDYDIMEGAQWASLIQSLSSRKEGlpGPHLRITALSRNKERgsgr 273
                               **************************************************************763266*********88879999 PP

                      GRAS 154 ..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                  + +++etg+rL++fA+++g pf f+    ++ e+++  +L++ +gEal+ n+v++l +l  +    ++ + ++ +  k+l++
  Tp57577_TGAC_v2_mRNA8791 274 rsTTATVQETGRRLTSFAASVGQPFTFHQCRLDSDEMFRAASLKLVRGEALVFNCVMHLPHLSYR---ASDSIASFFNGAKELES 355
                               988999***********************999999************************999843...3344569********** PP

                      GRAS 237 kvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                               k+v++ve+e+   +++ F+  f+++l+ ysa++dslea++p ++ +r+ vE+++lg++i+  va+   + +e+ +  ++W e+l+
  Tp57577_TGAC_v2_mRNA8791 356 KLVTLVEEEVGPtSDGGFVGLFMDSLHRYSAMYDSLEAGFPMNKWARSLVEQVFLGPRIMGSVAQLYMNGEEEGQVRGSWGEWLG 440
                               *********9987999********************************************************************* PP

                      GRAS 321 eaGFkpvp 328
                               + GFk ++
  Tp57577_TGAC_v2_mRNA8791 441 AEGFKGIT 448
                               ****9875 PP
2GRAS37.92.6e-12453509318374
                      GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                               +l++ GFk v++s+ + +q klll  ++ dgyrvee  ++ lvlgWk+r+L+s+S W+
  Tp57577_TGAC_v2_mRNA8791 453 WLGAEGFKGVTISYGNHCQSKLLLGLFN-DGYRVEEMgNNKLVLGWKSRRLLSASIWT 509
                               57789***********************.******88699999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.49183489IPR005202Transcription factor GRAS
PfamPF035143.9E-83109448IPR005202Transcription factor GRAS
PfamPF035148.9E-10453509IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEMDIDMVMD VVPDFLEFSN YSNTTTTPTS DEGITLSPLL DLDFFTTNQD DFHDFIDALT  60
NDEIITVDPN LDKTVVEQDE EEGSMGDMSN SNSTTDEDTD DDDRKGLRLV HLLMAAAEAL  120
TGTNKSHHLA QVILIRLKDL VSSTHGTNME RLAAYFTDAL QTLLNGADTG TTANNHHNKL  180
CLLTGPHQTD LLSAFQLLQD MSPYVKFAHF TANQAILEAV THDRRVHIVD YDIMEGAQWA  240
SLIQSLSSRK EGLPGPHLRI TALSRNKERG SGRRSTTATV QETGRRLTSF AASVGQPFTF  300
HQCRLDSDEM FRAASLKLVR GEALVFNCVM HLPHLSYRAS DSIASFFNGA KELESKLVTL  360
VEEEVGPTSD GGFVGLFMDS LHRYSAMYDS LEAGFPMNKW ARSLVEQVFL GPRIMGSVAQ  420
LYMNGEEEGQ VRGSWGEWLG AEGFKGITXX XXWLGAEGFK GVTISYGNHC QSKLLLGLFN  480
DGYRVEEMGN NKLVLGWKSR RLLSASIWTC MSKSEYDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4910251212382Protein SCARECROW
5b3h_A9e-5010251211381Protein SCARECROW
5b3h_D9e-5010251211381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8791
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614758.20.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2K3M2380.0A0A2K3M238_TRIPR; Nodulation-signaling pathway 2 protein (Fragment)
STRINGAES977160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-141GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]