PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA8709 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | G2-like | ||||||||
Protein Properties | Length: 133aa MW: 15099.5 Da PI: 10.2512 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.8 | 2.9e-29 | 13 | 70 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm...kvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+ Fveav++LGG+++AtPk il++m ++ L+++hvkSHLQkYR+ Tp57577_TGAC_v2_mRNA8709 13 KERLRWTQQLHDLFVEAVNRLGGPDRATPKGILKVMtamGISELSIYHVKSHLQKYRI 70 68****************************998876111677799************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-27 | 11 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.06E-15 | 12 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-23 | 13 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.8E-8 | 15 | 69 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MGSTRSDSSA THKERLRWTQ QLHDLFVEAV NRLGGPDRAT PKGILKVMTA MGISELSIYH 60 VKSHLQKYRI SKLIPESTTR GKIEKKSISD ILPNFCSISA LQLKEVLQMQ AEVQKRMDDR 120 VEVFYNVYSK SF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-22 | 13 | 72 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-22 | 13 | 72 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-22 | 13 | 72 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-22 | 13 | 72 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA8709 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449146.1 | 3e-77 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 7e-38 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2Z6M4W7 | 3e-83 | A0A2Z6M4W7_TRISU; Uncharacterized protein | ||||
STRING | XP_004514212.1 | 8e-76 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-40 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA8709 |