PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA8693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 292aa MW: 34993.4 Da PI: 7.2015 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.8 | 9.3e-26 | 50 | 132 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W+ qe+++ + +r+++++++ ++k++k+lWe +s+km+e+g++rs++qCk+kw+nl +ryk ++++e + ++++py+++l Tp57577_TGAC_v2_mRNA8693 50 QWSIQETKEFLMIRSDLDQTFMETKRNKQLWEVISNKMKEKGYHRSAEQCKCKWKNLVTRYKGCETMELEA---MRQQFPYYNEL 131 7*******************************************************************985...56689*****9 PP trihelix 86 e 86 + Tp57577_TGAC_v2_mRNA8693 132 Q 132 8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 6.17E-23 | 49 | 114 | No hit | No description |
Pfam | PF13837 | 2.2E-21 | 50 | 134 | No hit | No description |
PROSITE profile | PS50090 | 7.271 | 51 | 107 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MEGHHLHHHQ QQHHQQQQRQ QQQQQQHQQH AHNIIGTSSV NVDVTDRFPQ WSIQETKEFL 60 MIRSDLDQTF METKRNKQLW EVISNKMKEK GYHRSAEQCK CKWKNLVTRY KGCETMELEA 120 MRQQFPYYNE LQAIFSARMQ RMLWAEAEGG SKKKGMHVSS EDEEELGNEE SEGDHKGNIK 180 KKKKKGKMVI GGGNDSGSTS NNLKEILEEF MKQQMQMEAQ WMEAFEAREN ERRLKEMEWR 240 QTMEALENER IMMEQRWRER EEQRRVREEA RAEKRDALIT ILLDKLTRED M* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 2e-12 | 51 | 130 | 7 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA8693 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004514215.1 | 1e-145 | trihelix transcription factor GT-3b-like | ||||
Swissprot | O80450 | 6e-72 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A2K3L1S7 | 1e-150 | A0A2K3L1S7_TRIPR; Trihelix transcription factor GT-3b-like protein | ||||
STRING | XP_004514215.1 | 1e-145 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38250.1 | 2e-53 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA8693 |
Publications ? help Back to Top | |||
---|---|---|---|
|