PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8597
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 359aa    MW: 39752.5 Da    PI: 6.9834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8597genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-102713111055
                               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Tp57577_TGAC_v2_mRNA8597 271 RKRRERINERLRVLQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 311
                               9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-14261326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12267320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.41E-12270315No hitNo description
PfamPF000101.6E-7271311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDSTELISQE WSSLSGLYTA EEADFMNHFL GNSSLPQHLY QNSNFGTESA FWPSHDSTIV  60
TVTKNNDDSN FAAQVRSSTY DSSNIFPATS CVVNNPVTNF GYISMGLSIG DSKFTPFTTQ  120
PDEQVLAHKN LQAPKEHEIL ISEPEEDKTT STEKSGKRSR SSNEVDKHKT LTSKLFTYCC  180
FFLSPSKCIP IPVPKNKRNV KCRKNMICAS RSTEDQTISS CCSEDESNSS HELRGGSSSS  240
LSQNDSTALK LSGKSRSSRG PATDPQSLYA RKRRERINER LRVLQNLVPN GTKVDISTML  300
EEAVQYVKFL QLQIKLLSSD DLWMYSPIAY NGMNIGLELG ITPTKGMHSI AIKEHSAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610621.11e-172transcription factor bHLH84
TrEMBLA0A2K3N9560.0A0A2K3N956_TRIPR; Transcription factor bHLH84-like protein
STRINGAES935791e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.13e-44ROOT HAIR DEFECTIVE 6-LIKE 2