PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8310
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 510aa    MW: 56556.6 Da    PI: 6.5084
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8310genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.7e-31297355259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Tp57577_TGAC_v2_mRNA8310 297 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 355
                               699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925291357IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-31291357IPR003657WRKY domain
SuperFamilySSF1182903.92E-26294357IPR003657WRKY domain
SMARTSM007741.4E-37296356IPR003657WRKY domain
PfamPF031061.1E-25298355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MCSSIFVSST SSTISSSTSS SKTMDNYQGD LTDIIRAPGT TTATATTTAG AYSTTGTSSS  60
SSEYVLQHLH DNQWHHHNHN HQLFSSSDHL HRQHHHQHQQ QQNMSFINSV LEGTNMNNMF  120
GDPLFSTLRD PFLQELDHIP SSSYFNITTN TTTTTTAATT TTASPASTSI INVSDVSNSI  180
FALDHNHNHE IRSNSRPCKN IFSNMIQISP NPKLPSNYES SSTMAPSPRQ IKQVVSTNIN  240
INANISKDSL LDNTGVQISS SRNSSGLKRR KNQAKKVVCI PAPAAANSRQ TGEVVPSDLW  300
AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPTQR  360
NALAGSTRSQ PSKTNMKNSE ASLTQNDTSK PKEENQENNN SDENDSPIVN NVKEENMEDI  420
EKLQIEMDEV EGEFNDGLSY KSSMIENNQS HEDFFAELGE IEADPLNLLF NQGFSGNSST  480
NDVHQRDQSK GLDPFHLFDW SVDNNNTNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25271358280Disease resistance protein RRS1
5w3x_D4e-25271358280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150385e-52AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463080.10.0probable WRKY transcription factor 14
TrEMBLA0A2Z6NCU40.0A0A2Z6NCU4_TRISU; Uncharacterized protein
STRINGXP_004486508.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.13e-77WRKY DNA-binding protein 14