PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8097
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 152aa    MW: 17198.8 Da    PI: 7.9118
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8097genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.6e-1855102148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Tp57577_TGAC_v2_mRNA8097  55 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYL 102
                               79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-2546105IPR009057Homeodomain-like
PROSITE profilePS5129425.79750106IPR017930Myb domain
SMARTSM007174.9E-1554104IPR001005SANT/Myb domain
PfamPF002495.1E-1755102IPR001005SANT/Myb domain
SuperFamilySSF466893.55E-2256130IPR009057Homeodomain-like
CDDcd001677.45E-1257102No hitNo description
Gene3DG3DSA:1.10.10.606.2E-7106129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MILEPQKDLS WTTNIAGFVV MNPFWQEKCS SSSSESFEVS SMGRPPCCDK VGVKKGPWTP  60
EEDIILVSYI QEHGPGNWRS VPTNTGLSRC SKSCRLRWTN YLRPGIKRGN FTPHEEGMII  120
HLQALLGNNH IITQLIEALY LHTFHKEQIM I*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8097
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1353159e-88BT135315.1 Lotus japonicus clone JCVI-FLLj-18D4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028761366.13e-61transcription factor MYB60-like
SwissprotB3VTV73e-60MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A0L9U7592e-59A0A0L9U759_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RX522e-59A0A0S3RX52_PHAAN; Uncharacterized protein
TrEMBLA0A151TAB82e-59A0A151TAB8_CAJCA; Myb-related protein 306 family
TrEMBLA0A1S3TBJ03e-59A0A1S3TBJ0_VIGRR; myb-related protein 306
TrEMBLA0A445L6663e-59A0A445L666_GLYSO; Transcription factor MYB30
TrEMBLI1JK533e-59I1JK53_SOYBN; Uncharacterized protein
STRINGGLYMA03G00890.15e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82033145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-61myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]