PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 158aa MW: 18481.6 Da PI: 10.1773 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.7 | 9.4e-11 | 10 | 48 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +i n s r+ + kR++gi+KK E+ +LCd+ ++ ii Tp57577_TGAC_v2_mRNA7859 10 FICNISARKECYRKRKKGIIKKMREIKILCDIPACAIIS 48 6889999999*************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.685 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-7 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-17 | 4 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.9E-12 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene3D | G3DSA:1.20.58.90 | 4.6E-4 | 48 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MAGKKVKVAF ICNISARKEC YRKRKKGIIK KMREIKILCD IPACAIISNP FNSNNIEVWP 60 DLEEAKQVIE RYQNLSQIDK TKNVNQESFV LQRLTKAREK LEKQRQEIRD KEMTIRMIQY 120 MKNKNLPDDV SVSDLKHFQK LIEENLKDID NKLNGSN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 25 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7859 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003614286.1 | 3e-65 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2K3M4B5 | 1e-108 | A0A2K3M4B5_TRIPR; Agamous-like mads-box protein agl80-like | ||||
STRING | AES97244 | 1e-64 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13237 | 9 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 1e-27 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7859 |