PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA7211

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GeBP

Protein Properties

Length: 435aa MW: 48502.8 Da PI: 4.5396

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA7211	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	121.9	3.1e-38	106	202	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85 klfqrlw++eDe+ lLqG++d+++++g+s ++d+ +fy+++k++++++++k+qlveKirrLKkK+++ +k++sgke++f+++hd Tp57577_TGAC_v2_mRNA7211 106 KLFQRLWTDEDEMELLQGFLDYTTQRGSSHHNDTAQFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKISSGKEFVFKTAHD 190 579******************************************************************************** PP DUF573 86 qkifelskkiWg 97 q +fe+s+kiW+ Tp57577_TGAC_v2_mRNA7211 191 QATFEISRKIWN 202 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.0E-34	108	202	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MASQQHDTVF PDEDIDDEDE EFHEYEEEDE EEEEDVLVEE EENASISAPS VTVAVPGSAI 60 SNGEIRPPIV TPTATTIVFA NSFPDSKRQR LDQIEEKKPP LEDSRKLFQR LWTDEDEMEL 120 LQGFLDYTTQ RGSSHHNDTA QFYDQIKSKL QLDFNKNQLV EKIRRLKKKY RNVLNKISSG 180 KEFVFKTAHD QATFEISRKI WNNVAPIAGD IAIDDEEINL NPSPNPNLNF TPVILKSEST 240 SHTRKRSRPR SVIRSFEKRE SNDAIASIRD RDYLNINLNN PNPNFNPNPI ANPIIATTSA 300 TVNTAATTTA PTITTAPNTN PAINANNYSN NCSSNIGNSV AGVIEETVRS CLSPLLKELM 360 TSATGGPFGG ARGGSGFAMN PLQLMNLGFG EVVDEKWRKQ QILELEVYSK RLELVQDQIK 420 ASIDELRSVG GSTF*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MASQQHDTVF PDEDIDDEDE EFHEYEEEDE EEEEDVLVEE EENASISAPS VTVAVPGSAI  60
SNGEIRPPIV TPTATTIVFA NSFPDSKRQR LDQIEEKKPP LEDSRKLFQR LWTDEDEMEL  120
LQGFLDYTTQ RGSSHHNDTA QFYDQIKSKL QLDFNKNQLV EKIRRLKKKY RNVLNKISSG  180
KEFVFKTAHD QATFEISRKI WNNVAPIAGD IAIDDEEINL NPSPNPNLNF TPVILKSEST  240
SHTRKRSRPR SVIRSFEKRE SNDAIASIRD RDYLNINLNN PNPNFNPNPI ANPIIATTSA  300
TVNTAATTTA PTITTAPNTN PAINANNYSN NCSSNIGNSV AGVIEETVRS CLSPLLKELM  360
TSATGGPFGG ARGGSGFAMN PLQLMNLGFG EVVDEKWRKQ QILELEVYSK RLELVQDQIK  420
ASIDELRSVG GSTF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA7211

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC171498	0.0	AC171498.6 Medicago truncatula chromosome 7 BAC clone mth2-7n16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003626394.1	0.0	probable transcription factor At5g28040
TrEMBL	A0A2K3LQD1	0.0	A0A2K3LQD1_TRIPR; DNA-binding storekeeper transcriptional regulator (Fragment)
STRING	AES82612	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	6e-58	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA7211