PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7115
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 447aa    MW: 50997.4 Da    PI: 6.309
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7115genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.42.8e-21113210185
                  trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt. 72 
                               +Wt++ v +Li++++ ++++   g             +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++t 
  Tp57577_TGAC_v2_mRNA7115 113 KWTDNVVGLLIAVVSCVGDDGTIGGvdgsvkrksvvlQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTc 197
                               7**************6666666554444455566888**********************************************75 PP

                  trihelix  73 sessstcpyfdql 85 
                               ++++++ ++ d++
  Tp57577_TGAC_v2_mRNA7115 198 CQVVENPALMDSM 210
                               7888888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-17111237No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
LVWKXXXLSS ILDIESSFQR HQQTQLGNSS GQQDMNIMPG LENKNQFDTI EVKNLNMGLT  60
FGKGKGIASS NPDNSNDMSE DDEQGYAEDG NCENFYDGGK GKKGGSSPWQ RMKWTDNVVG  120
LLIAVVSCVG DDGTIGGVDG SVKRKSVVLQ KKGKWKTVSK IMISKGCHVS PQQCEDKFND  180
LNKRYKRLNE ILGRGTCCQV VENPALMDSM PNLSAKAKDD VRKILSSKHL FYKEMCAYHN  240
GQRIPNSHDL DLHSYSLEHG KDSRDNDGSE DEDEDNHESE EDDLDNGINI NNAHGGGGRM  300
EEFCDGNKLS EDDGHFWPQS VGMAKLEVEM ARVFQDPAKL PWERREWIKV QLLKLEEQNV  360
EYQARAFELQ KQRFKWLRYC SKKDRELEKM RMENKRMKLE NERRILKLKQ REQEADFSRS  420
EMSLDPTSIG INRPRGREHI NLARQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1614060.0AC161406.8 Medicago truncatula chromosome 2 BAC clone mth2-83p17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486956.10.0uncharacterized protein LOC101493778 isoform X1
TrEMBLA0A2K3KZ680.0A0A2K3KZ68_TRIPR; Uncharacterized protein
STRINGXP_004486956.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-67