PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6762
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 141aa    MW: 15509.2 Da    PI: 9.5194
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6762genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.4e-11556147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT+eE+e l  +v+++G g Wk I r          R+  ++k++w+++
  Tp57577_TGAC_v2_mRNA6762  5 KQKWTAEEEEALQVGVQRYGAGKWKNILRDPElqpklISRSNIDLKDKWRNL 56
                              79****************************999999989***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.004162IPR017930Myb domain
SuperFamilySSF466891.22E-15258IPR009057Homeodomain-like
SMARTSM007171.6E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-14556IPR009057Homeodomain-like
PfamPF002492.5E-8556IPR001005SANT/Myb domain
CDDcd116601.53E-20657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALQVGV QRYGAGKWKN ILRDPELQPK LISRSNIDLK DKWRNLNVFP  60
GQTANAKARA TPKAKPSPSV APVNATLSPS PVTVITAAAT PSPXXXXXXX XXXXXXXXXX  120
XXXXXYCCCY SFSGYYSCSC *
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6762
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597561.21e-36telomere repeat-binding factor 5
SwissprotF4I7L11e-28TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A2K3PGC61e-66A0A2K3PGC6_TRIPR; Telomere repeat-binding factor 5-like protein
STRINGAES678124e-36(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-30MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]